Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01145 ATGGGTAAGGAGAAGGTTCACATCAACATTGTGGTCATCGGCCATGTTGACTCCGGAAAATCCACCACCACCGGCCACTTAATCTACAAGCTTGGTGGCATTGACAAGCGTGTGATTGAGCGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTACGCATGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAGAGGGGTATCACCATTGATATTGCCTTGTGGAAGTTTGAAACCACTAAATACTACTGCACTGTCATTGATGCCCCTGGACATCGAGATTTCATCAAAAACATGATTACTGGAACTTCACAAGCTGATTGTGCTGTTCTTATCATTGATTCTACGACTGGAGGTTTCGAAGCTGGTATTTCCAAGGATGGTCAAACTCGTGAGCATGCTCTTCTCGCCTTCACTCTTGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCTACAACCCCGAAATATTCTAAGGGGAGGTACGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAAGTTGGTTATAACCCCGATAAAATTCCTTTTGTCCCCATTTCTGGATTTGAAGGCGACAACATGATTGAGAGGTCTACAAACCTTGACTGGTACAAGGGTCCGACTCTTCTCGAGGCTCTTGACTTGATCCTGGAACCCAAGAGACCCACTGACAAGCCTCTCAGGCTCCCGCTTCAAGATGTTTACAAGATTGGTGGTATTGGTACCGTTCCCGTGGGACGGGTTGAGACTGGTGTTCTCAAGCCTGGTATGGTTGTTACTTTTGGCCCAACTGGTCTGAGCACTGAGGTCAAGTCTGTTGAGATGCACCATGAGGCTCTTCAAGAAGCTCTCCCAGGCGACAATGTCGGTTTCAACGTTAAGAATGTTGCAGTGAAGGATCTCAAGCGTGGTTTTGTTGCTTCTAATTCTAAGGACGATCCTGCTAGGGAAGCGGCCAACTTCACCTCCCAAGTTATCATTATGAACCACCCTGGCCAGATTGGAAATGGTTATGCCCCTGTTCTTGATTGCCACACCTCGCACATTGCTGTCAAATTCGGAGAGATACTGACCAAGATTGACAGACGATCTGGAAAGGAGCTTGAGAAGGAGCCGAAGTTCTTGAAGAACGGCGATGCTGCATTTGTCAAAATGCTTCCCACCAAACCCATGGTCGTGGAGACCTTCGCTGAGTATCCCCCACTCGGCCGTTTTGCTGTCCGAGACATGCGGCAAACCGTGGCCGTCGGTGTCATCAAGAGCGTCGAGAAGAAGGATCCAACTGGTGCAAAGGTCACTAAGTCTGCTGCCAAGAAAACTGGCAAGTGA 1350 47.78 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLILEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLSTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLKNGDAAFVKMLPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAAKKTGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50514532 50515968 + Bma028592.1 Bma08g01145 87972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01145 449 PANTHER TRANSLATION FACTOR 1 447 - -
Bma08g01145 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Bma08g01145 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Bma08g01145 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bma08g01145 449 Gene3D Translation factors 229 316 - -
Bma08g01145 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Bma08g01145 449 CDD EF1_alpha_II 230 320 - -
Bma08g01145 449 Gene3D - 1 226 IPR027417 -
Bma08g01145 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bma08g01145 449 CDD EF1_alpha_III 323 426 - -
Bma08g01145 449 CDD EF1_alpha 9 227 - -
Bma08g01145 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 Gene3D Translation factors 323 430 - -
Bma08g01145 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bma08g01145 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Bma08g01145 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bma08g01145 449 Pfam Elongation factor Tu GTP binding domain 6 224 IPR000795 GO:0003924|GO:0005525
Bma08g01145 449 SUPERFAMILY Translation proteins 226 321 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01145 Bma-Chr8:50514532 Bma11g00158 Bma-Chr11:1437897 0 dispersed
Bma06g00224 Bma-Chr6:2652013 Bma08g01145 Bma-Chr8:50514532 8.87E-45 transposed
Bma15g00565 Bma-Chr15:6533233 Bma08g01145 Bma-Chr8:50514532 1.49E-42 transposed
Bma03g00766 Bma-Chr3:7009485 Bma08g01145 Bma-Chr8:50514532 3.99E-45 transposed
Bma11g00157 Bma-Chr11:1435075 Bma08g01145 Bma-Chr8:50514532 0 wgd
Bma03g00087 Bma-Chr3:678748 Bma08g01145 Bma-Chr8:50514532 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01145 K03231 - egr:104432850 884.019