Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01152 ATGGCCAAGGCTACGGAAGTTTCTGCGCAAGGATCGTTCTCGGCGAAGGACTACCACGACCCACCACCGGCGCCGCTCGTTGACGCGGAGGAGCTGTTGCAGTGGTCTTTCTACAGGGCGTTGATAGCGGAGTTTATAGCTACTTTGCTTTTTCTCTACGTCACTATCTTGACTGTGATTGGTTATACCAGCCAAACTACGTCCGACCCATGCGGCGGCGTAGGGGTTCTAGGTATCGCATGGGCCTTCGGCGGCATGATCTTCGTTCTCGTCTACTGCACTGCTGGAATTTCAGGTTCGCTGTCTCTCAACTTTCTCACCCTCCGAACTCATTGTCTTGCAGGGGGTCACATAAACCCGGCGGTGACCTTGGGGTTGTTCTTGGCTCGAAAGGTGTCGCTGGTCCGAGCCGTGATGTACATGGTGGCTCAGTGTTTAGGAGCCATATGCGGAGTGGCGCTCGTTAAGGCGTTCCAAAAGGCTCATTACAGTAATCATGGAGGTGGAGCCAACCATCTCGCCGATGGCTACAGCACAGGCGTCGGTCTCGGTGCAGAGATCATAGGCACCTTCGTTTTGGTCTACACAGTCTTCTCGGCCACTGATCCGAAGAGAAATGCCAGAGACTCCCACGTACCGGTTCTGGCTCCGCTTCCGATCGGATTTGCTGTGTTCATGGTTCACTTGGCCACAATCCCGATCACCGGCACCGGAATCAACCCAGCTAGAAGTCTTGGAGCTGCTGTCGTCTACAATCAGAAAAACACGTGGGATGAGCAATGGATTTTTTGGGTCGGACCATTCGTCGGAGCAGCCATTGCAGCGTTCTATCATCAGTTCATACTGAGGGCGGCGGCAGCTAAAGCTCTTGGATCTTTCAGGAGCAATTCCCATGTCTGA 900 53.89 MAKATEVSAQGSFSAKDYHDPPPAPLVDAEELLQWSFYRALIAEFIATLLFLYVTILTVIGYTSQTTSDPCGGVGVLGIAWAFGGMIFVLVYCTAGISGSLSLNFLTLRTHCLAGGHINPAVTLGLFLARKVSLVRAVMYMVAQCLGAICGVALVKAFQKAHYSNHGGGANHLADGYSTGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVVYNQKNTWDEQWIFWVGPFVGAAIAAFYHQFILRAAAAKALGSFRSNSHV 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50551770 50553448 - Bma028597.2 Bma08g01152 87979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01152 299 TIGRFAM MIP: MIP family channel proteins 43 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 Gene3D Glycerol uptake facilitator protein. 24 299 IPR023271 -
Bma08g01152 299 PANTHER AQUAPORIN PIP2-1 108 296 - -
Bma08g01152 299 CDD MIP 39 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 Pfam Major intrinsic protein 32 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 ProSitePatterns MIP family signature. 117 125 IPR022357 -
Bma08g01152 299 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 PRINTS Major intrinsic protein family signature 99 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 PRINTS Major intrinsic protein family signature 221 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma08g01152 299 PANTHER AQUAPORIN PIP2-1 7 100 - -
Bma08g01152 299 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 108 296 IPR034294 -
Bma08g01152 299 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 100 IPR034294 -
Bma08g01152 299 SUPERFAMILY Aquaporin-like 31 283 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01921 Bma-Chr1:70932899 Bma08g01152 Bma-Chr8:50551770 9.38E-116 dispersed
Bma03g00613 Bma-Chr3:5030967 Bma08g01152 Bma-Chr8:50551770 9.22E-142 dispersed
Bma04g01411 Bma-Chr4:48871349 Bma08g01152 Bma-Chr8:50551770 5.02E-12 dispersed
Bma05g00373 Bma-Chr5:11918162 Bma08g01152 Bma-Chr8:50551770 3.98E-145 dispersed
Bma05g00835 Bma-Chr5:45726737 Bma08g01152 Bma-Chr8:50551770 1.14E-129 dispersed
Bma08g00749 Bma-Chr8:43945857 Bma08g01152 Bma-Chr8:50551770 4.35E-102 dispersed
Bma08g01152 Bma-Chr8:50551770 Bma12g00064 Bma-Chr12:1219290 1.24E-127 dispersed
Bma07g00147 Bma-Chr7:2120793 Bma08g01152 Bma-Chr8:50551770 3.67E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01152 K09872 - gmx:100815583 490.73