Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01153 ATGGATTCCGTGAAAGAAGAAAGCAATAACTCGGAGAAGTATTTAGATTCTCAGCTATGGCATGCTTGTGCCGGCGGAATGGTTGAAATCCCACCCGTCAATTCAAAAGTCTTCTACTTTCCTCAAGGCCATGCAGAAATGGCCGAGGGACAGTTGGATTTTAGAACCCATAAAATTCCACCTCTGGTTCTTACCAGAGTTTCTGCAATTCGATTCATGGCGGATTCGCAAACTGACGAGGTTTTCGCTGAAATTTGTTTGCATCCTTTGAGCAGTAATGATTTTGAAAGCGGAGCAGACGATTGGATTGGGGGAAACAACCAAAGTGAGAGCGAAGAAAAGCATACTTCCTTCGCTAAAACTTTGACTCAATCTGATGCCAACAATGGCGGTGGATTTTCCGTCCCTCGCTATTGCGCAGAAACAATTTTCCCGCCTTTGAACTACTCGGCAAATCCGCCCGTTCAAACGATAAACGTAAAAGATGTTCACGGCCAGATTTGGAAGTTCAGGCATATTTATCGGGGGACTCCTCGGCGCCACCTTCTGACGACCGGATGGAGTAATTTCGTGAATTATAAGAAGCTCGTGGCCGGAGACTCGATCGTGTTTTTAAAAGCCGAGAATGGGGAGCTTCGGATCGGAATAAGGAGGGCCAAGAGGGGAATCGGAGGGCAGTTTGATTGCTCAAGAGGAACAGTGAGTGCCGATTCGATAATCGAATCGGCAATTCTTGCATCGAGAGGACATGCTTTTGTGGTGAAGTATTTTCCGCGCTCTAACACGCCTCCGTTTTTCGTCGGGGCCCGTGCAGTGAGAGCTGCAATGCGAGTTCGATGGTCGGCCGGAATGAGGTTCAAGATGGCTTTCGAAACCGAAGATTCGTCTAGAATTAGTTGGTTTATGGGAACTATATCTTCCATCCAAGTCTCCGATCCCATCCGGTGGCCGGATTCTCCTTGGAGGCTTCTGCAGGTAACATGGGACGAGCCGGATTTATTACAAAATGTGAAGTTCGTCAATCCATGGTCGATTGAGATGGTGACAAACATGTTACCTTATCATATATCCCCTTTTGGGTCACTGGCGAAAAAACCAAAGCTTCTATCGAGCCCGACAATGTCGCCGGAGTTCGTCAAGCCGATGAGCGACTTTCCGGGAATGTTAGATGTCACTCTCGCAGGCATTCAGGGAGCCAGGCACGCTCAATCTACACTCTCTTCATTGAATCTCAGCAAATTTCAAGCTACTAATCTTCCAATGATGGCGAAAAACAACTCCACGGGCAGTGGCAGAAAATCCGAGTGGCAAAACTCAGAAAAACCCTCCAAAATTTTGAAAGAAAAAGAGCTAAAAACACCACACATCTTATTATTCGGACAAGTTATCCTTCTAGACCAAACTGTTTCAAAGGATAACACCATAGACACTGCCGGAAAAAGTTTGTCGGAAAAGACAGACACCTCCGATGGCGTAGGTACATCACCACCTTGGAATAGTTCGCCCGAAAATTTATCGGATGCAGGGTCTCCGTGGTGTAAAGATCACCAGAAAACCGTTGTCGATCTCAAGACCGGCCATTGCAACGAGTTCGGCGATCAAATTTTCTTAGCGGGCGATCATTTTTCAATTCCTTGA 1638 46.64 MDSVKEESNNSEKYLDSQLWHACAGGMVEIPPVNSKVFYFPQGHAEMAEGQLDFRTHKIPPLVLTRVSAIRFMADSQTDEVFAEICLHPLSSNDFESGADDWIGGNNQSESEEKHTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLNYSANPPVQTINVKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNYKKLVAGDSIVFLKAENGELRIGIRRAKRGIGGQFDCSRGTVSADSIIESAILASRGHAFVVKYFPRSNTPPFFVGARAVRAAMRVRWSAGMRFKMAFETEDSSRISWFMGTISSIQVSDPIRWPDSPWRLLQVTWDEPDLLQNVKFVNPWSIEMVTNMLPYHISPFGSLAKKPKLLSSPTMSPEFVKPMSDFPGMLDVTLAGIQGARHAQSTLSSLNLSKFQATNLPMMAKNNSTGSGRKSEWQNSEKPSKILKEKELKTPHILLFGQVILLDQTVSKDNTIDTAGKSLSEKTDTSDGVGTSPPWNSSPENLSDAGSPWCKDHQKTVVDLKTGHCNEFGDQIFLAGDHFSIP 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50555010 50556750 - Bma028598.1 Bma08g01153 87980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01153 545 SMART B3_2 118 220 IPR003340 GO:0003677
Bma08g01153 545 CDD B3_DNA 117 218 IPR003340 GO:0003677
Bma08g01153 545 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 230 531 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma08g01153 545 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 227 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma08g01153 545 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Bma08g01153 545 MobiDBLite consensus disorder prediction 423 442 - -
Bma08g01153 545 Gene3D - 279 352 - -
Bma08g01153 545 SUPERFAMILY DNA-binding pseudobarrel domain 113 220 IPR015300 -
Bma08g01153 545 MobiDBLite consensus disorder prediction 479 511 - -
Bma08g01153 545 PANTHER AUXIN RESPONSE FACTOR 16 7 227 - -
Bma08g01153 545 PANTHER AUXIN RESPONSE FACTOR 16 230 531 - -
Bma08g01153 545 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Bma08g01153 545 MobiDBLite consensus disorder prediction 479 507 - -
Bma08g01153 545 Gene3D - 116 220 IPR015300 -
Bma08g01153 545 Pfam Auxin response factor 245 325 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00079 Bma08g01153 CCT
Bma03g00079 Bma08g01153 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01923 Bma-Chr1:71019323 Bma08g01153 Bma-Chr8:50555010 0 dispersed
Bma04g00608 Bma-Chr4:5796813 Bma08g01153 Bma-Chr8:50555010 0 dispersed
Bma08g01153 Bma-Chr8:50555010 Bma07g00773 Bma-Chr7:22588261 2.58E-82 dispersed
Bma11g00175 Bma-Chr11:1567754 Bma08g01153 Bma-Chr8:50555010 2.61E-171 wgd
Bma03g00079 Bma-Chr3:618630 Bma08g01153 Bma-Chr8:50555010 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57806 PF02362 B3 1.90E-21 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01153 - - tcc:18586407 566.614