Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01169 ATGGATGGTCTTCGGAAACCGCGGCCCGGCAGAACGACGTCGCTTCGAGACGCCTCTGAGTCGGAGAAGATGGAGGGCCCTGGCTCATGGGACGCCATTGAATGGACTAAGATCGAGCCGGTTTCTCGGTTGGTCGCGAACGTGAGTGTAGATTGCCTGCTTGAAGCTGAACAAGTTGTGGCTGAGGGTAATGGTGTTGTCCTTGTAAATACCGGTGAGGCTGGTACTTTGTATGTGACCAACTATCGTCTTCTTTTTCTTAATGGAGGAACTGGAAAAACTATTTCCTTGGGCACTATACCACTGGCGACAATTGAGAAGTTTAGCAAGATGGTGTTGAAGGGTCAATCAGCCCCACGCCAATTGGAAAAGATTCCAGCTCGAAGGCTTCTGCAGGTCATAGGTAAAGACATGAGAGTGGTAGTCTTTGGTTTCCGTCCTAAAACAAAACAGCGGCGACGGATATATGATGCATTGCTTGGATGTACAAAGCCAGCAAGACTATGGGATCTGTATGCTTTTATATCAGGTCCTTCTAGATATAGCAACACTAGCCCAAAGGTTCGATTACTTAATGAATATTATCGGCTACTTGGAAAAAGCTTCCGCCGTGCATCATTGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAACTATGGAGAGTAACCGATATAAATTACAATTATACTATGTGTCAGAGTTATCCATTTGCATTGATTGTTCCAAAATCTATTACTGATGATGAAGTGCTCCAGGCTTCCAACTTTCGTGCTAGAGGCCGGTTACCTGTAGTTTCATGGTGCCACCCTGAAAGTGGAGCTGTTCTGGCCCGTTCATCACAACCCTTGGTTGGTTTCATGATGAATATGAGGAGCAATACAGATGAAAAGCTTGTTGCTGCACTTTGTTCTCAATTTGCTGGTGCTGAGGAGCCACGTAGAAAGCTGTATATTGCCGATGCAAGACCTAGAAAAAATGCATTAGCGAATGGGGCAATGGGAGGTGGGTCAGAATCATCTTCAAATTATTCTCAATCTGAGATAGTATTCTTCGGGGTTGACAATATACATGCAATGAGAGAGAGTCTCGCTAGGCTTAGAGACTACTTAGATACTCATGGTGCCACTTCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGAGGGAATCTGAGTAGTATGTCTGCTTCTGTATCTACTCTTGGAGACAGTGGTTGGTTAATACACGTCCAAACTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGCGTTGAATTGGAATCTGCATCAGTTCTTGTTCATTGCAGTGATGGTTGGGACAGAACAACTCAACTGGTATCACTTGCTAGTTTGTTGCTTGATCCATACTATCGGACATTCACAGGGTTTCAGGCTCTGATCGAGAAGGATTGGCTGGCATTTGGCCATCCTTGTTCAGATCGCATGGGTGTACCATCTATGTTTGGAAGTGGGAACATGCCTTCTGAACTATCTAGGCAGTCTTCTACGGGGAGTTTCCCCTCATCTCCTCTGCGGCAGTCATCAGGATCATTCACATCTCAAGCTCCTGTTCCTCCTCAGGGGCACTCATCAAACAATTATTCTCCAATATTTTTGCAGTGGATTGATTGTGTATCGCAACTTCTGCGGATCTATCCATTTGCATTTGAGTTTTCCTCGGCTTTTTTGGTGGATTTGTTAGATTGTTTTCTTTCTTGTCGCTTTGGGAACTTTCTGTGCAATAGTGAGAAGGAGAGGCAGCAATGTGGTGTTTCTGAAGTTTGTGGGTGCTTATGGGCATATTTGGCTGACTTGCGTGCTTCAGAGGGTAGTTCTCATTTTCACTATAACCTCTTCTATGATCCGTCAAAATTCAATGCTCCACTGCTGCCTCCAGCAGCAGCCTTAGCTCCGACTCTGTGGCCTCATTTCCATCTTCGTTTTTCTTGTCCATCTGAGGCTCAATCTGGGGAAATTGAAATGCAATTTAGGAAAATGGCTAATCAATTCTCTGGACTTCAAAAGGAGAAGGAAATGGCAGAAAGAAAAGCTAAAGAGATAACATCTCTCATGAAGTCATTAAATGTGGAATTGCGAAAGGAGAGACAACTTGCCAGCTCAGCGATGAACTTAGCAAAAAGAGCGAGCAAGGAAAGCGAGTCGATAAAGCGAGCAATACAATCTCTTGGTTGTAAAGTTAATTTCTCCAGCAATAGCGATTGTGTAGTAGATGTAGAAGATAATCCAATGGAGGCTTCTCAGAGATTTAAATATTTATCAAAAAGAGAATCAGATGGGAAGGCGCAGGAAAATGATCTCTCTGTATCTGTAACAGTCATTGGAGACGAAGAGGCTAACAGTCCCTTCGGAAGTATTTGTGAAACGCTCTGCCCATTACGGACAAGAGAAGGAGGCTGCAGATGGCCAGACGCAGGTTGTGCGCAGATGGGTAGCCAATTTGTTGGACTGAAAGCAAACTTCGATGCATTTGATCGTCTATCGCTACAAGAAAGTTATTTTAAGTCTGATTGA 2556 44.29 MDGLRKPRPGRTTSLRDASESEKMEGPGSWDAIEWTKIEPVSRLVANVSVDCLLEAEQVVAEGNGVVLVNTGEAGTLYVTNYRLLFLNGGTGKTISLGTIPLATIEKFSKMVLKGQSAPRQLEKIPARRLLQVIGKDMRVVVFGFRPKTKQRRRIYDALLGCTKPARLWDLYAFISGPSRYSNTSPKVRLLNEYYRLLGKSFRRASLSMIEDGSFTLSNELWRVTDINYNYTMCQSYPFALIVPKSITDDEVLQASNFRARGRLPVVSWCHPESGAVLARSSQPLVGFMMNMRSNTDEKLVAALCSQFAGAEEPRRKLYIADARPRKNALANGAMGGGSESSSNYSQSEIVFFGVDNIHAMRESLARLRDYLDTHGATSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQTVLAGSAWIAARVELESASVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALIEKDWLAFGHPCSDRMGVPSMFGSGNMPSELSRQSSTGSFPSSPLRQSSGSFTSQAPVPPQGHSSNNYSPIFLQWIDCVSQLLRIYPFAFEFSSAFLVDLLDCFLSCRFGNFLCNSEKERQQCGVSEVCGCLWAYLADLRASEGSSHFHYNLFYDPSKFNAPLLPPAAALAPTLWPHFHLRFSCPSEAQSGEIEMQFRKMANQFSGLQKEKEMAERKAKEITSLMKSLNVELRKERQLASSAMNLAKRASKESESIKRAIQSLGCKVNFSSNSDCVVDVEDNPMEASQRFKYLSKRESDGKAQENDLSVSVTVIGDEEANSPFGSICETLCPLRTREGGCRWPDAGCAQMGSQFVGLKANFDAFDRLSLQESYFKSD 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50654066 50669041 + Bma028613.1 Bma08g01169 87996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01169 851 Coils Coil 671 705 - -
Bma08g01169 851 MobiDBLite consensus disorder prediction 501 536 - -
Bma08g01169 851 CDD PTP-MTM-like 262 555 - -
Bma08g01169 851 Pfam Myotubularin-like phosphatase domain 188 595 IPR010569 -
Bma08g01169 851 PANTHER MYOTUBULARIN-RELATED 20 850 IPR030564 -
Bma08g01169 851 SUPERFAMILY PH domain-like 52 175 - -
Bma08g01169 851 MobiDBLite consensus disorder prediction 1 28 - -
Bma08g01169 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 656 IPR029021 -
Bma08g01169 851 SMART gram2001c 42 112 IPR004182 -
Bma08g01169 851 MobiDBLite consensus disorder prediction 1 24 - -
Bma08g01169 851 ProSiteProfiles Myotubularin phosphatase domain. 199 653 IPR010569 -
Bma08g01169 851 ProSitePatterns Tyrosine specific protein phosphatases active site. 441 451 IPR016130 GO:0016311|GO:0016791
Bma08g01169 851 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 20 850 - -
Bma08g01169 851 Gene3D - 64 162 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01169 K18081 MTMR1_2; myotubularin-related protein 1/2 [EC:3.1.3.64 3.1.3.95] - jre:109009366 1282.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g616 . Blo13g00941 . . . . . Bma08g01169 . . . . . . . Cpe13g00776 . Bhi04g01282 . . . Hepe02g2902 . Lcy10g1700 . . . . . . . . . Cone11ag1023 Cone18ag0555 Lsi08g00665 . . . . . . Bda15g00402 . . . . . . Cmo15g00495 . Cma15g00486 . Car15g00447 . . . . . . . . . Cla08g00816 Cam08g1250 Cec08g0835 Cco08g0946 Clacu08g0953 . Cre08g0754 . . Chy03g00887 Cme03g01177
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma01g02539 . 23 322 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 2.3e-116 415.6
Bma04g01172 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma04g01175 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma08g00279 . 2 197 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 3.1e-59 227.3
Bma04g01172 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma04g01175 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma03g01302 . 1 190 Protein tyrosine phosphatase (PTP) family AT2G04550 67.9 2.5e-66 248.4
Bma03g00369 . 17 294 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 4.2e-116 414.5
Bma03g00203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 69.3 1.2e-107 386.3
Bma01g00998 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 3.6e-194 674.5
Bma01g00978 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 70.4 6.7e-193 670.2
Bma02g01405 . 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 57.0 1.1e-70 263.5
Bma03g01308 BCT 20 210 Protein tyrosine phosphatase (PTP) family AT2G32960 55.6 1.8e-65 246.1
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT2G32960 59.2 8.1e-50 194.1
Bma02g00600 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.1 1.4e-49 193.4
Bma08g00533 BCT 51 152 Protein tyrosine phosphatase (PTP) family AT2G32960 60.3 1.9e-38 156.4
Bma14g00635 . 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.4 6.6e-100 360.9
Bma01g00214 . 6 266 Protein tyrosine phosphatase (PTP) family AT2G35680 52.3 2.4e-78 289.3
Bma02g01405 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 2.5e-75 278.5
Bma03g01308 BCT 36 210 Protein tyrosine phosphatase (PTP) family AT4G03960 67.4 3.5e-69 258.1
Bma02g00600 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.5e-53 204.9
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT4G03960 66.9 3.7e-50 194.9
Bma08g00533 BCT 30 152 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 1.3e-39 159.8
Bma02g00600 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 3.7e-82 301.2
Bma03g01308 BCT 45 202 Protein tyrosine phosphatase (PTP) family AT3G02800 62.0 3.5e-56 214.9
Bma02g01405 . 47 205 Protein tyrosine phosphatase (PTP) family AT3G02800 61.0 7.8e-56 213.8
Bma08g00538 . 1 125 Protein tyrosine phosphatase (PTP) family AT3G02800 57.6 1.9e-38 156.0
Bma03g00116 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 5.9e-59 226.1
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g00514 BCT 8 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.9 1.0e-228 789.6
Bma03g01356 BCT 32 610 Protein tyrosine phosphatase (PTP) family AT3G19420 67.1 5.0e-223 770.8
Bma15g00872 . 34 591 Protein tyrosine phosphatase (PTP) family AT3G19420 57.4 4.0e-188 654.8
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma14g00419 . 56 243 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 2.8e-74 275.4
Bma12g00216 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 9.8e-111 396.7
Bma10g00319 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 2.2e-288 988.0
Bma10g00319 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 5.9e-262 900.2
Bma10g00319 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.9 7.7e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g01169 Bma_Chr08 FPKM 10.134744 9.161668 12.621189 13.702972 6.815115 6.833491 7.103132 14.452764 14.817765 15.700593