Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01171 ATGTTGAGGATGGAAAAGGATTTCGATACCAAGTTGAGAATTCAGAGGAAATCTTCTAATGGAGGGAACGTTCAAAGATCTAAAAGCTTTGCTTTTCGAGCTCCACAGGAGAGTTTCACGATTCAGGATTTTGAATTGGGCAAAATCTATGGCGTTGGTTCTTATTCCAAGGTTGTGAGGGCGAAGAAGAAGGATACAGGAACAATCTATGCAATGAAGATAATGGACAAAAAATTCATCACCAAAGAAAACAAAACTGCTTATGTCAAGCTAGAACGCATTGTGCTCGATCAGTTGGATCATCCCGGCGTTGTGCGACTATTTTTCACGTTTCAAGACACCCTTTCGCTCTACATGGCTCTCGAATCCTGCGAAGGTGGAGAACTTTTTGACCAAATAAACAGGAAAGGTTGCTTGCCAGAAGATGAAGCTCGGTTCTATGCTGCCGAAGTTGTGGATGCTCTTGAATATATACATAGTATGGGACTGATTCACCGGGATATTAAGCCCGAAAATTTGCTTCTCACTGCCGATGGACATATTAAAATTGCTGATTTTGGAAGCGTGAAGCCCATGCAGGATAGTCGAATTACCGTTCTTCCAAATGCTGCATCAGATGACAAAGCTTGTACATTTGTGGGGACAGCAGCATATGTTCCTCCAGAAGTCCTCAATTCGTCCCCTGCAACTTTTGGAAATGACCTCTGGGCACTTGGCTGCACCCTGTACCAGATGCTTTCAGGCACTTCCCCTTTTAAAGATGCAAGTGAATGGCTCATTTTTCAAAGAATTATAGCTAGAGAGATAAGGTTTCCAAATTACTTTTCGGAGGAAGCTAAAGATCTTATCGACCGCTTGCTGGATATTGATCCCAGCCGCAGACCCGGTGCAGGAGCTGAAGGCTATGGTGTACTGAAGATGCATCCCTTTTTTGATGGAGTGGATTGGAAGAATATCAGGGCTCAAAAACCACCAAAAGTTGCTTTGCAAGCTTTGGTAAGGCTTCATATTCCTCTTGAAAAAATCCACCAGGCTGTGAGTACTGATTTTTCTCATTCTGTGAGTCTTCAGGTCTCTTCAGGCGAAGGTAGTGGTAAAGTCCATGATTCTTCATGGAACCCTGCCCATGGTGGGGATGGTGCAGGCGGAAATTATGATGCCCTTGGATCATCGTCCGAAGCCTCCGGACATATCACTAGGCTTGCCTCGATCGACTCATTCGATTCCAAGTGGCAACAGTTCCTTGAAGCTGGAGAATCAGTCCTGATGATCTCAATGGTGAAGAAAATTCAGAAGCTTTCAAGCAAAAAAGTGCAGCTTATCCTCACCAATAAACCAAAACTAATTTATGTAAATCCTTCCAAGCTTAATGTAAAAAGGAACATAATATGGTCCGACAATCGAAACGACTTGAACGTCCAAGTCGCGACTCCTTCCCAATTCAAGATCTGCACGCCAAAAAAGATCTTATCGTTCGAGGATTCGAAGCAGAGGGGATGGCAGTGGAAGAAGGCGATCGAGACGCTTCAGAGCCGGTGA 1539 44.12 MLRMEKDFDTKLRIQRKSSNGGNVQRSKSFAFRAPQESFTIQDFELGKIYGVGSYSKVVRAKKKDTGTIYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTLSLYMALESCEGGELFDQINRKGCLPEDEARFYAAEVVDALEYIHSMGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPNYFSEEAKDLIDRLLDIDPSRRPGAGAEGYGVLKMHPFFDGVDWKNIRAQKPPKVALQALVRLHIPLEKIHQAVSTDFSHSVSLQVSSGEGSGKVHDSSWNPAHGGDGAGGNYDALGSSSEASGHITRLASIDSFDSKWQQFLEAGESVLMISMVKKIQKLSSKKVQLILTNKPKLIYVNPSKLNVKRNIIWSDNRNDLNVQVATPSQFKICTPKKILSFEDSKQRGWQWKKAIETLQSR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50679270 50682404 - Bma028615.1 Bma08g01171 87998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01171 512 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01171 512 CDD STKc_PDK1 42 311 IPR039046 GO:0004674
Bma08g01171 512 MobiDBLite consensus disorder prediction 361 388 - -
Bma08g01171 512 Pfam PH domain 409 510 IPR033931 -
Bma08g01171 512 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01171 512 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Bma08g01171 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Bma08g01171 512 SUPERFAMILY Protein kinase-like (PK-like) 27 335 IPR011009 -
Bma08g01171 512 Gene3D Transferase(Phosphotransferase) domain 1 128 324 - -
Bma08g01171 512 Gene3D - 389 512 IPR011993 -
Bma08g01171 512 Pfam Protein kinase domain 46 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01171 512 SUPERFAMILY PH domain-like 305 511 - -
Bma08g01171 512 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 508 - -
Bma08g01171 512 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 18 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01171 Bma-Chr8:50679270 Bma10g00360 Bma-Chr10:3382980 1.81E-59 dispersed
Bma08g01171 Bma-Chr8:50679270 Bma07g00121 Bma-Chr7:1949041 1.18E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66681 PF00069 Pkinase 1.10E-66 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01171 K06276 - tcc:18586587 822.387