Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g01171 | ATGTTGAGGATGGAAAAGGATTTCGATACCAAGTTGAGAATTCAGAGGAAATCTTCTAATGGAGGGAACGTTCAAAGATCTAAAAGCTTTGCTTTTCGAGCTCCACAGGAGAGTTTCACGATTCAGGATTTTGAATTGGGCAAAATCTATGGCGTTGGTTCTTATTCCAAGGTTGTGAGGGCGAAGAAGAAGGATACAGGAACAATCTATGCAATGAAGATAATGGACAAAAAATTCATCACCAAAGAAAACAAAACTGCTTATGTCAAGCTAGAACGCATTGTGCTCGATCAGTTGGATCATCCCGGCGTTGTGCGACTATTTTTCACGTTTCAAGACACCCTTTCGCTCTACATGGCTCTCGAATCCTGCGAAGGTGGAGAACTTTTTGACCAAATAAACAGGAAAGGTTGCTTGCCAGAAGATGAAGCTCGGTTCTATGCTGCCGAAGTTGTGGATGCTCTTGAATATATACATAGTATGGGACTGATTCACCGGGATATTAAGCCCGAAAATTTGCTTCTCACTGCCGATGGACATATTAAAATTGCTGATTTTGGAAGCGTGAAGCCCATGCAGGATAGTCGAATTACCGTTCTTCCAAATGCTGCATCAGATGACAAAGCTTGTACATTTGTGGGGACAGCAGCATATGTTCCTCCAGAAGTCCTCAATTCGTCCCCTGCAACTTTTGGAAATGACCTCTGGGCACTTGGCTGCACCCTGTACCAGATGCTTTCAGGCACTTCCCCTTTTAAAGATGCAAGTGAATGGCTCATTTTTCAAAGAATTATAGCTAGAGAGATAAGGTTTCCAAATTACTTTTCGGAGGAAGCTAAAGATCTTATCGACCGCTTGCTGGATATTGATCCCAGCCGCAGACCCGGTGCAGGAGCTGAAGGCTATGGTGTACTGAAGATGCATCCCTTTTTTGATGGAGTGGATTGGAAGAATATCAGGGCTCAAAAACCACCAAAAGTTGCTTTGCAAGCTTTGGTAAGGCTTCATATTCCTCTTGAAAAAATCCACCAGGCTGTGAGTACTGATTTTTCTCATTCTGTGAGTCTTCAGGTCTCTTCAGGCGAAGGTAGTGGTAAAGTCCATGATTCTTCATGGAACCCTGCCCATGGTGGGGATGGTGCAGGCGGAAATTATGATGCCCTTGGATCATCGTCCGAAGCCTCCGGACATATCACTAGGCTTGCCTCGATCGACTCATTCGATTCCAAGTGGCAACAGTTCCTTGAAGCTGGAGAATCAGTCCTGATGATCTCAATGGTGAAGAAAATTCAGAAGCTTTCAAGCAAAAAAGTGCAGCTTATCCTCACCAATAAACCAAAACTAATTTATGTAAATCCTTCCAAGCTTAATGTAAAAAGGAACATAATATGGTCCGACAATCGAAACGACTTGAACGTCCAAGTCGCGACTCCTTCCCAATTCAAGATCTGCACGCCAAAAAAGATCTTATCGTTCGAGGATTCGAAGCAGAGGGGATGGCAGTGGAAGAAGGCGATCGAGACGCTTCAGAGCCGGTGA | 1539 | 44.12 | MLRMEKDFDTKLRIQRKSSNGGNVQRSKSFAFRAPQESFTIQDFELGKIYGVGSYSKVVRAKKKDTGTIYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDTLSLYMALESCEGGELFDQINRKGCLPEDEARFYAAEVVDALEYIHSMGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPNYFSEEAKDLIDRLLDIDPSRRPGAGAEGYGVLKMHPFFDGVDWKNIRAQKPPKVALQALVRLHIPLEKIHQAVSTDFSHSVSLQVSSGEGSGKVHDSSWNPAHGGDGAGGNYDALGSSSEASGHITRLASIDSFDSKWQQFLEAGESVLMISMVKKIQKLSSKKVQLILTNKPKLIYVNPSKLNVKRNIIWSDNRNDLNVQVATPSQFKICTPKKILSFEDSKQRGWQWKKAIETLQSR | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 50679270 | 50682404 | - | Bma028615.1 | Bma08g01171 | 87998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g01171 | 512 | SMART | serkin_6 | 44 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma08g01171 | 512 | CDD | STKc_PDK1 | 42 | 311 | IPR039046 | GO:0004674 | |
Bma08g01171 | 512 | MobiDBLite | consensus disorder prediction | 361 | 388 | - | - | |
Bma08g01171 | 512 | Pfam | PH domain | 409 | 510 | IPR033931 | - | |
Bma08g01171 | 512 | ProSiteProfiles | Protein kinase domain profile. | 44 | 311 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma08g01171 | 512 | Gene3D | Phosphorylase Kinase; domain 1 | 42 | 127 | - | - | |
Bma08g01171 | 512 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 163 | 175 | IPR008271 | GO:0004672|GO:0006468 | |
Bma08g01171 | 512 | SUPERFAMILY | Protein kinase-like (PK-like) | 27 | 335 | IPR011009 | - | |
Bma08g01171 | 512 | Gene3D | Transferase(Phosphotransferase) domain 1 | 128 | 324 | - | - | |
Bma08g01171 | 512 | Gene3D | - | 389 | 512 | IPR011993 | - | |
Bma08g01171 | 512 | Pfam | Protein kinase domain | 46 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma08g01171 | 512 | SUPERFAMILY | PH domain-like | 305 | 511 | - | - | |
Bma08g01171 | 512 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 18 | 508 | - | - | |
Bma08g01171 | 512 | PANTHER | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 | 18 | 508 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g01171 | Bma-Chr8:50679270 | Bma10g00360 | Bma-Chr10:3382980 | 1.81E-59 | dispersed | |
Bma08g01171 | Bma-Chr8:50679270 | Bma07g00121 | Bma-Chr7:1949041 | 1.18E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66681 | PF00069 | Pkinase | 1.10E-66 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g01171 | K06276 | - | tcc:18586587 | 822.387 |