Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01187 ATGAGCTCGTTCGGAATATTTGAGGAAATTGGATTTGACAGGACTCTGGAGGATCTATCTGAGCCTCCCATCCAAGAACAGGATATGGGGGAGGATGATCATAGTGATGAAGAGATGGAGATTGAGGAGCTGGAGAGAAGAATGTGGAGAGATCGAATCCTATTGAAGCGACTCAAAGAACAAAGCAAGGAAAAGGAAGGGCTGCAGAATTTGAAGAAGAGCCAATCGCAAGAGCAAGCTCGGAGGAAGAAGATGTCGAGAGCGCAAGATGGTATATTGAAATATATGTTGAAGATGATGGAAGTGTGTAAAGCCCAAGGATTTGTGTACGGAATAATTCCCGAGAAGGGAAAGCCAGTGAGCGGGGCTTCCGATAATCTCCGAGCTTGGTGGAAGGAAAAGGTTCGATTCGATCGTAATGGCCCTGCTGCCGTTTCTAAATATCAAGCAAACCATATTGATGGCTCCGGTGCCGTGATTTATACGCCTCACACTTTGCAAGAGCTCCAGGACACAACTCTTGGATCAATTTTATCGGCTCTGATGCAGCATTGCGAACCTCCCCAGAGGCGTTTTCCGTTGGAAAAAGGTGTTCCCCCTCCATGGTGGCCGACTGGACGGGAGCTATGGTGGGACGAGTTGGGATTTCCACAAGATCAAGGTCCGCCACCCTACAAGAAGCCTCATGATCTGAAGAAAGCATGGAAAGTCAGTGTTCTAACGGCTGTGATTAAGCACATGTTCCCTGATGTTGCTAAGATTCGGAAGCTCGTTCATCAATCCAAGTGTTTGCAGGACAAAATGACGGCAAAGGAAAGTGCCACATGGCTGGCCATTGTTGACCGGGAGGAAGATTTGGCCCGCAAGTTATATCCCGGTCAGTGTCCGCCATCAACTGCTGGCGGGCACAATTCATTCATGACCTGTGCAACAGACGATTATGATGTTGAAGGAGTAGACGATGAATCAACTGCTGAGGTAGAGGAACACAAGCCCCTTGATTTTAAGATGAGTGGACCAAGGGATTCAATCATGTTGCCTCCATTGGCTTCCAAAATTGAAGGAGACCCCATGGAGAACACTTTTGATATTATCCAAAAGAGGAAGCAACCCATGGGCGAGATGAATATGATGGTGGATCGGAAGATATTTACTTGCGAGCATATAAAATGTCCGTACAATGATTATCGTCTCGGCTTTCTTGATATTACTTCAAGAAACAATCACCAGCTCAATTGCCCGTTTCGGAGTGCTTTGTCAAATTTTCAGACCAACAATGTTTGGTCGACGCCAGTTTCTCTACCATTGAATCAGACTCCACCCTTCCATGCTTCAGCTCTCGACCTTCCCGAGTATGGACAAAAAATAATCGCTGATTTGATGACGGTCTATGACTGTAACATTCAACGAATCAAAAACTCTAATCCGGGAAATCTCGAGGAAATGGACGAGCTCAGAGAGAAGGAGCCGAAGTTCTGTTTTCAGGTCGAAAGCAACTTGTATAGTCATGGTGTAACCATAGGAAGAAATGTGTCTCAAGAAACAAATGTTGATACTGATTTAACGTCCCTGGAAATTCCAAACAATGGGAGCAGGACATTTGAGAGCAATCTGAATGATGATATTGTGGATTTTAGGTTTGATTCTCCATACAACTTTTCATCAGTTGATTATCCACTTGATCCCTCGTTGCTGAAGCAAGACATCTCCTTGTGGTACCTTTGA 1725 45.28 MSSFGIFEEIGFDRTLEDLSEPPIQEQDMGEDDHSDEEMEIEELERRMWRDRILLKRLKEQSKEKEGLQNLKKSQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAVSKYQANHIDGSGAVIYTPHTLQELQDTTLGSILSALMQHCEPPQRRFPLEKGVPPPWWPTGRELWWDELGFPQDQGPPPYKKPHDLKKAWKVSVLTAVIKHMFPDVAKIRKLVHQSKCLQDKMTAKESATWLAIVDREEDLARKLYPGQCPPSTAGGHNSFMTCATDDYDVEGVDDESTAEVEEHKPLDFKMSGPRDSIMLPPLASKIEGDPMENTFDIIQKRKQPMGEMNMMVDRKIFTCEHIKCPYNDYRLGFLDITSRNNHQLNCPFRSALSNFQTNNVWSTPVSLPLNQTPPFHASALDLPEYGQKIIADLMTVYDCNIQRIKNSNPGNLEEMDELREKEPKFCFQVESNLYSHGVTIGRNVSQETNVDTDLTSLEIPNNGSRTFESNLNDDIVDFRFDSPYNFSSVDYPLDPSLLKQDISLWYL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50764292 50766016 - Bma028629.1 Bma08g01187 88014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01187 574 Gene3D - 74 152 IPR023278 GO:0003700|GO:0005634
Bma08g01187 574 MobiDBLite consensus disorder prediction 24 39 - -
Bma08g01187 574 Gene3D - 161 294 IPR023278 GO:0003700|GO:0005634
Bma08g01187 574 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 18 573 - -
Bma08g01187 574 SUPERFAMILY DNA-binding domain of EIN3-like 163 287 IPR023278 GO:0003700|GO:0005634
Bma08g01187 574 MobiDBLite consensus disorder prediction 12 39 - -
Bma08g01187 574 Coils Coil 27 78 - -
Bma08g01187 574 Pfam Ethylene insensitive 3 42 284 IPR006957 GO:0005634
Bma08g01187 574 MobiDBLite consensus disorder prediction 62 85 - -
Bma08g01187 574 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 18 573 IPR006957 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01339 Bma-Chr7:48924782 Bma08g01187 Bma-Chr8:50764292 3.49E-07 dispersed
Bma08g01187 Bma-Chr8:50764292 Bma14g00784 Bma-Chr14:8747331 1.90E-121 dispersed
Bma08g01187 Bma-Chr8:50764292 Bma14g00810 Bma-Chr14:9026124 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57810 PF04873 EIN3 4.90E-126 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01187 K14514 - vvi:100250496 728.013