Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01187 ATGAGCTCGTTCGGAATATTTGAGGAAATTGGATTTGACAGGACTCTGGAGGATCTATCTGAGCCTCCCATCCAAGAACAGGATATGGGGGAGGATGATCATAGTGATGAAGAGATGGAGATTGAGGAGCTGGAGAGAAGAATGTGGAGAGATCGAATCCTATTGAAGCGACTCAAAGAACAAAGCAAGGAAAAGGAAGGGCTGCAGAATTTGAAGAAGAGCCAATCGCAAGAGCAAGCTCGGAGGAAGAAGATGTCGAGAGCGCAAGATGGTATATTGAAATATATGTTGAAGATGATGGAAGTGTGTAAAGCCCAAGGATTTGTGTACGGAATAATTCCCGAGAAGGGAAAGCCAGTGAGCGGGGCTTCCGATAATCTCCGAGCTTGGTGGAAGGAAAAGGTTCGATTCGATCGTAATGGCCCTGCTGCCGTTTCTAAATATCAAGCAAACCATATTGATGGCTCCGGTGCCGTGATTTATACGCCTCACACTTTGCAAGAGCTCCAGGACACAACTCTTGGATCAATTTTATCGGCTCTGATGCAGCATTGCGAACCTCCCCAGAGGCGTTTTCCGTTGGAAAAAGGTGTTCCCCCTCCATGGTGGCCGACTGGACGGGAGCTATGGTGGGACGAGTTGGGATTTCCACAAGATCAAGGTCCGCCACCCTACAAGAAGCCTCATGATCTGAAGAAAGCATGGAAAGTCAGTGTTCTAACGGCTGTGATTAAGCACATGTTCCCTGATGTTGCTAAGATTCGGAAGCTCGTTCATCAATCCAAGTGTTTGCAGGACAAAATGACGGCAAAGGAAAGTGCCACATGGCTGGCCATTGTTGACCGGGAGGAAGATTTGGCCCGCAAGTTATATCCCGGTCAGTGTCCGCCATCAACTGCTGGCGGGCACAATTCATTCATGACCTGTGCAACAGACGATTATGATGTTGAAGGAGTAGACGATGAATCAACTGCTGAGGTAGAGGAACACAAGCCCCTTGATTTTAAGATGAGTGGACCAAGGGATTCAATCATGTTGCCTCCATTGGCTTCCAAAATTGAAGGAGACCCCATGGAGAACACTTTTGATATTATCCAAAAGAGGAAGCAACCCATGGGCGAGATGAATATGATGGTGGATCGGAAGATATTTACTTGCGAGCATATAAAATGTCCGTACAATGATTATCGTCTCGGCTTTCTTGATATTACTTCAAGAAACAATCACCAGCTCAATTGCCCGTTTCGGAGTGCTTTGTCAAATTTTCAGACCAACAATGTTTGGTCGACGCCAGTTTCTCTACCATTGAATCAGACTCCACCCTTCCATGCTTCAGCTCTCGACCTTCCCGAGTATGGACAAAAAATAATCGCTGATTTGATGACGGTCTATGACTGTAACATTCAACGAATCAAAAACTCTAATCCGGGAAATCTCGAGGAAATGGACGAGCTCAGAGAGAAGGAGCCGAAGTTCTGTTTTCAGGTCGAAAGCAACTTGTATAGTCATGGTGTAACCATAGGAAGAAATGTGTCTCAAGAAACAAATGTTGATACTGATTTAACGTCCCTGGAAATTCCAAACAATGGGAGCAGGACATTTGAGAGCAATCTGAATGATGATATTGTGGATTTTAGGTTTGATTCTCCATACAACTTTTCATCAGTTGATTATCCACTTGATCCCTCGTTGCTGAAGCAAGACATCTCCTTGTGGTACCTTTGA 1725 45.28 MSSFGIFEEIGFDRTLEDLSEPPIQEQDMGEDDHSDEEMEIEELERRMWRDRILLKRLKEQSKEKEGLQNLKKSQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAVSKYQANHIDGSGAVIYTPHTLQELQDTTLGSILSALMQHCEPPQRRFPLEKGVPPPWWPTGRELWWDELGFPQDQGPPPYKKPHDLKKAWKVSVLTAVIKHMFPDVAKIRKLVHQSKCLQDKMTAKESATWLAIVDREEDLARKLYPGQCPPSTAGGHNSFMTCATDDYDVEGVDDESTAEVEEHKPLDFKMSGPRDSIMLPPLASKIEGDPMENTFDIIQKRKQPMGEMNMMVDRKIFTCEHIKCPYNDYRLGFLDITSRNNHQLNCPFRSALSNFQTNNVWSTPVSLPLNQTPPFHASALDLPEYGQKIIADLMTVYDCNIQRIKNSNPGNLEEMDELREKEPKFCFQVESNLYSHGVTIGRNVSQETNVDTDLTSLEIPNNGSRTFESNLNDDIVDFRFDSPYNFSSVDYPLDPSLLKQDISLWYL 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50764292 50766016 - Bma028629.1 Bma08g01187 88014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01187 574 Gene3D - 74 152 IPR023278 GO:0003700|GO:0005634
Bma08g01187 574 MobiDBLite consensus disorder prediction 24 39 - -
Bma08g01187 574 Gene3D - 161 294 IPR023278 GO:0003700|GO:0005634
Bma08g01187 574 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 18 573 - -
Bma08g01187 574 SUPERFAMILY DNA-binding domain of EIN3-like 163 287 IPR023278 GO:0003700|GO:0005634
Bma08g01187 574 MobiDBLite consensus disorder prediction 12 39 - -
Bma08g01187 574 Coils Coil 27 78 - -
Bma08g01187 574 Pfam Ethylene insensitive 3 42 284 IPR006957 GO:0005634
Bma08g01187 574 MobiDBLite consensus disorder prediction 62 85 - -
Bma08g01187 574 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 18 573 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01187 K14514 EIN3; ethylene-insensitive protein 3 - vvi:100250496 728.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01339 Bma-Chr7:48924782 Bma08g01187 Bma-Chr8:50764292 3.49E-07 dispersed
Bma08g01187 Bma-Chr8:50764292 Bma14g00784 Bma-Chr14:8747331 1.90E-121 dispersed
Bma08g01187 Bma-Chr8:50764292 Bma14g00810 Bma-Chr14:9026124 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00810 . 2 613 EIL Transcription Factor Family AT2G27050 60.6 6.7e-193 670.6
Bma08g01187 . 1 481 EIL Transcription Factor Family AT2G27050 56.6 2.6e-144 509.2
Bma14g00784 . 46 365 EIL Transcription Factor Family AT2G27050 56.0 1.6e-93 340.5
Bma14g00784 . 78 328 EIL Transcription Factor Family AT5G21120 52.5 6.2e-73 271.9
Bma14g00784 . 46 576 EIL Transcription Factor Family AT1G73730 51.9 1.9e-136 483.0
Bma14g00810 . 40 333 EIL Transcription Factor Family AT1G73730 62.9 5.0e-105 378.6
Bma08g01187 . 28 323 EIL Transcription Factor Family AT1G73730 56.8 3.3e-96 349.4
Bma14g00810 . 3 613 EIL Transcription Factor Family AT3G20770 61.1 1.1e-204 709.9
Bma08g01187 . 22 469 EIL Transcription Factor Family AT3G20770 60.4 2.9e-149 525.8
Bma14g00784 . 46 385 EIL Transcription Factor Family AT3G20770 53.2 2.9e-93 339.7
Bma14g00784 . 83 288 EIL Transcription Factor Family AT5G65100 61.6 3.1e-70 263.1
Bma14g00810 . 32 298 EIL Transcription Factor Family AT5G10120 57.9 1.9e-84 310.1
Bma08g01187 . 33 286 EIL Transcription Factor Family AT5G10120 56.7 3.0e-82 302.8
Bma14g00784 . 46 290 EIL Transcription Factor Family AT5G10120 53.1 2.9e-69 259.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57810 PF04873 EIN3 4.90E-126 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g01187 Bma_Chr08 FPKM 0.0 0.0 0.722152 0.936931 0.0 0.0 0.0 3.462584 2.633914 6.031462