Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01217 ATGAATTCACTCGCAGTGTTTTCAACTTTACCTCTTCTCTTACTCCTTATTTCCCTCCCCCAAATAACATCTAATTTAGATTCAGACAGACAAGCTCTTCTTGCCTTTGCTGCCTCTATTCCTCATGGTCGAAGAGTTAACTGGACTTCTGCTACATCCGTATGCAGTTGGGTTGGGATCACTTGCACCGCAAATCAGTCTGCGGTATTTGCTCTAAGACTCCCTGGTACTGGACTGTATGGCCAAGTACCAGCCAACACTATTGGGAAGCTGAGTTCTCTCAGAATACTTAGCCTTCGATCTAATCGTCTCATTGGAAGTCTTCCATCAGATGTTCTGTCCCTCCCCTCCCTCCAGTACATCTATCTACAGCATAATAGCTTTTCTGGTGAAATTCCTTCTTCCATGTCTTCTCAGCTAATTGTTCTTGATTTATCTTTCAATTTTCTCACTGGCAATATTCCTTCAACGATTCAAAATTTAACGTATCTCACTAGCCTCAACCTTCAAAACAACTCTCTTACTGGCTCTGTTCCTGACATCACCACCCCGGCTCTTAAACGTTTGAATTTGAGCTTCAACCACCTAAATGGTTCGATTCCCTCTGCACTAAAAACATTTCCCGCTTCATCATTTGAAGGGAACTTAATGTTATGCGGAGCTCCGCTAAACTCATGCTCGTCACTTGTGCCCTCACCTTCTCCTTCTCATTCTCCAGCCACTCATAAACCAAAACATAGAAAGAAACTAAGTATTGCAATTATCATTGCCATTGCAATTGGGGGTTCTGTAGTGCTCTTTCTCATTGCTCTGATGATAATAATTTTCTGCTTGAAGAAGAGAGATCGAGATCGTAATGATAATGGTGTAGTGAAAGGAAAGGGTAAAAGGAATGAACAACCTAAGGATGACTTTGGGAGTGGGATACAAGAGGCCGAAAAGAACAAGTTGGTTTTCTTTGAAGGGTGTTGTTTTAACTTCGATCTTGAGGATTTGTTGAGAGCATCAGCTGAAGTTCTGGGAAAGGGGACTTATGGAACTACTTATAAAGCGATCTTGGAGGAGGGTACGACTGTTGTTGTGAAGAGGCTGAAAGAAGTGATGGTTGGTAAAAAGGAGTTCGAGCAGCAAATGGAGATTGTGGGGACGGTTGGTCAGCACCCAAATGTCGTGCCTCTTCGTGCTTACTACTATTCCAAGGATGAAAAGCTTTTGGTTTATGATTACATTGCGGCTGGAAGCTTTTCTGCGTTGCTGCATGGAAATACAGCGCCAGATTGGGAATCCAGAATAAAGATTTCACTGGGATGTGCGAGAGGCATAGCACATATCCATTCTGCTAGTGGGGGGAAACTCGTACATGGAAACATAAAATCCTCAAACGTTCTTCTAACCCAAGACCAGAATGGCAGCATCTCAGATTTTGGGCTAACTCCTTTAATGAACCACCCGAATTTTCCCCCTAGAACGGGTGGTTATCGAGCTCCTGAGGTGCTTGAAACTAGGAAGTCGACTCAAAAGTCTGATGTCTACAGTTTTGGAGTTGTTCTTCTGGAGATGTTGACTGGGAAAGCGCCAGCTCAATCCCCAGGGCGTGACGATATAGTCGACCTTCCACGGTGGGTCCAGTCCGTGGTTCGAGAGGAATGGACGTCCGAGGTGTTCGATGTTGAGCTGATCAAGTATCAGAACATTGAAGAAGAGCTGGTCCAAATGCTTCAAATAGGCATGGCCTGCGTTGCGAGAGTGCCGGACATGAGACCCACGATGGACGAAGTTGTTAGGAAGATGGAGGAAATCAGGTCGCCTGGTTCAGGAACTCGGCCATCGTCAGATGAAAACAAGCCCATTGAGTTGTAG 1860 44.73 MNSLAVFSTLPLLLLLISLPQITSNLDSDRQALLAFAASIPHGRRVNWTSATSVCSWVGITCTANQSAVFALRLPGTGLYGQVPANTIGKLSSLRILSLRSNRLIGSLPSDVLSLPSLQYIYLQHNSFSGEIPSSMSSQLIVLDLSFNFLTGNIPSTIQNLTYLTSLNLQNNSLTGSVPDITTPALKRLNLSFNHLNGSIPSALKTFPASSFEGNLMLCGAPLNSCSSLVPSPSPSHSPATHKPKHRKKLSIAIIIAIAIGGSVVLFLIALMIIIFCLKKRDRDRNDNGVVKGKGKRNEQPKDDFGSGIQEAEKNKLVFFEGCCFNFDLEDLLRASAEVLGKGTYGTTYKAILEEGTTVVVKRLKEVMVGKKEFEQQMEIVGTVGQHPNVVPLRAYYYSKDEKLLVYDYIAAGSFSALLHGNTAPDWESRIKISLGCARGIAHIHSASGGKLVHGNIKSSNVLLTQDQNGSISDFGLTPLMNHPNFPPRTGGYRAPEVLETRKSTQKSDVYSFGVVLLEMLTGKAPAQSPGRDDIVDLPRWVQSVVREEWTSEVFDVELIKYQNIEEELVQMLQIGMACVARVPDMRPTMDEVVRKMEEIRSPGSGTRPSSDENKPIEL 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 51208071 51210164 - Bma028660.1 Bma08g01217 88044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01217 619 Gene3D Ribonuclease Inhibitor 183 227 IPR032675 -
Bma08g01217 619 SUPERFAMILY Protein kinase-like (PK-like) 338 597 IPR011009 -
Bma08g01217 619 SUPERFAMILY L domain-like 40 215 - -
Bma08g01217 619 PANTHER OS05G0588300 PROTEIN 10 614 - -
Bma08g01217 619 Gene3D Transferase(Phosphotransferase) domain 1 411 614 - -
Bma08g01217 619 ProSitePatterns Protein kinases ATP-binding region signature. 340 371 IPR017441 GO:0005524
Bma08g01217 619 MobiDBLite consensus disorder prediction 287 307 - -
Bma08g01217 619 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Bma08g01217 619 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515
Bma08g01217 619 Pfam Leucine Rich Repeat 140 161 IPR001611 GO:0005515
Bma08g01217 619 CDD STKc_IRAK 340 600 - -
Bma08g01217 619 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Bma08g01217 619 Pfam Protein kinase domain 337 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01217 619 PANTHER OS05G0480400 PROTEIN 10 614 - -
Bma08g01217 619 MobiDBLite consensus disorder prediction 598 619 - -
Bma08g01217 619 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Bma08g01217 619 ProSiteProfiles Protein kinase domain profile. 334 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01049 Bma-Chr6:47314103 Bma08g01217 Bma-Chr8:51208071 0 dispersed
Bma07g01678 Bma-Chr7:52362916 Bma08g01217 Bma-Chr8:51208071 2.19E-110 dispersed
Bma08g00107 Bma-Chr8:1273070 Bma08g01217 Bma-Chr8:51208071 1.45E-141 dispersed
Bma08g01137 Bma-Chr8:50320801 Bma08g01217 Bma-Chr8:51208071 3.88E-22 dispersed
Bma08g01217 Bma-Chr8:51208071 Bma12g01282 Bma-Chr12:45808296 4.99E-178 dispersed
Bma12g01175 Bma-Chr12:44561562 Bma08g01217 Bma-Chr8:51208071 3.58E-48 dispersed
Bma12g01178 Bma-Chr12:44622656 Bma08g01217 Bma-Chr8:51208071 3.58E-48 dispersed
Bma15g00054 Bma-Chr15:717575 Bma08g01217 Bma-Chr8:51208071 2.99E-107 dispersed
Bma08g01217 Bma-Chr8:51208071 Bma01g00415 Bma-Chr1:3475932 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66685 PF00069 Pkinase 9.80E-38 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01217 - - csv:101210437 832.787