Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00003 ATGGAAGTTACGTTGTTAAAAGTGCTGCTGAGCCACATCTCATCATTTTTCCAACTGTCTTCATGTGACAATATAAGATCAGAACCTGTGTTAAAGTATTATCAAAATACAGGAGAGATATTGAAGTTGTTAAAACCAATACTTGATGCAGTTTTGAATTCAGAAACACCTTCTGAAGAAGCAGCGAACAAGTTATTCGAAGAACTTTGTTATTCTGTCGGTGAACTGAAAGAGCTATTTCAAAAGTGGCAGTCATTGTCAAGTAAATTATATTTCGTTTTGCTAAGTGATACATTGATTTCAAGGATTCAGAAAATCAGCCTTGATCTTTTTCAGTTTCTTCAGGCATCTCATGAAGATATCTTTGTTGAATCAAACTCATCTCTGGAGCAATGTGTTCAGAAAATAAGGTACGTCAGACATGAACAGTCCTCAATTGTTTTTAAAGATGCTCTTAGAGATCAAGTGGAGGGTGTTGCACCTAGTTCAGAGGTATTGGCAAAAATTGCAGGGTGCTTGAACTTAAGGTCTAACCAGGAAGTTCTAATTGAGGCTGTAGCGCTTGAGAAGTTGAAAGAGAATGCTGAGCAAGCTGAAAAGACTGGAGAAGCTGAATATATCGAACAAATGATTACTCTTGTAACATGCATGCATGAGCGCCTTTTGACGATGAAGCAGAGCGAGAACTATAGCCCAGTTTCAATACCTCCTGATTTCTGCTGTCCTCTGTCCCTTGATCTGATGACAGATCCGGTGATTGTATCCTCAGGACAAACGTATGAGCGAGCTTTTATCAAGGATTGGATTGATCTTGGGCTTACTGTTTGTCCTAAGACCAGGCAGACATTAGCTCACACTAATCTAATACCCAATTACACTGTTAAGGCACTGATTGCAAACTGGTGCGAGTCGAACAATGTGAAGCTTCCTGATCCCTTGAAGTCTGTGAGTGCAAACCAGCCCTCTCCCCTTCTTGGCAGCAGAAACTCTGTGGTACACCGAGACTCACCAGTGTTCCCTTATAATAGAAACTATCCACCAATGTCCCCAGAATCAACTCGGTCTGAAGGTTCTCCCGCTAACATCTTAAGTTCGCCAGGTAGGAACCTGCCCCAGCCAGATAATTCCTTACCTTCTGTTCCTGTAAATGTTCTGGGGTTGGATACTGAGAGAGTGTCGCTTACAACCTCAGAAGATAGTGTAGATACGTTGGAGGATGACAATTTAGTTATCCAATCTTCTATTACACCATTAAGAACAGATTATCACGGTGCTTCAGGAGCTGAATTGCCTCAAAGCCATTCCAGAACATCCTCTTCGTCCAATGCAGTTTCTGATTTTCCTCGAGAAGATTCAGAAGATGCCGTAGCCTCACTGGTTTCAACCATGACAGGATGTGCCGCTGATGCCTCTGCAGAGGTAAAAGTAGAGCCGCTGAAGCCTGATGCATTGACAAACACTTCGCAGAGAGAATCTGATCCGTTTCCTCCCAAACTAATGGAGACAAGATCACGAAGTCATAATCTGTGGCGCCGACCATCTGATAGGTTTATTCCTAGAATAGTTTCTTCTTCTTCTTCAATTGAAACTAGGCCAGATCTTTCTGGTGTTGAAGCCCAGGTTGAGAAGCTGGCTGAGGACTTGAAGAACCCTTCACTAGAGACTATAAGAGCGGCAGCTGCAGATATACGGCTACTGGCCAAGCACAATATGGATAACCGGATTGTGATTGCAAAGTGTGGGGTCATTACCTTATTAGTTGATTTGCTCACGTCGATGGACGCAGAAATCCAGGAGCATGCTGTGACAGCTCTTCTTAACTTATCAATCAATGATAACAATAAAACTATCATTGCCCAAGCCAATGCAATTGAACCCCTCATCCAAGTTCTTCAAACTGGGAGTCCCGAGGCAAAGGAGAATTCAGCGGCTACTCTCTTCAGCCTGTCAGTGATTGAAGAAAACAAAATAAAGATTGGAAGATCAGGGGCAATAGTACCTCTTGTTGATTTGCTGGGAAATGGAACTCCAAGGGGAAAGAAAGATGCTGCAACCGCGCTGTTTAATTTGTCAATATTTCACGAAAACAAGGCAAGAATTGTACAAGCTGGAGCTGTAAAACATCTGGTGGAGTTGATGGATCCAGCTGCTGGAATGGTGGACAAAGCAGTTGCTGTGTTGGCCAATCTCGCCACGATACCTGAGGGAAGAACAGCAATTGGTCAGGAGGGTGGAATCCCTGTGCTTGTGGAGGTTGTTGAGCTCGGTTCTGCTAGAGGGAAGGAGAATGCGGCTGCCGCATTGTTGCAGCTGTGCACGAGTAGCAATGGATTCTGCAGTAAGGTTCTTCAGGAAGGAGCAGTCCCTCCATTAGTGGCATTGTCACAATCTGGCACTCCCAGGGCAAGAGAAAAGGCACAAACACTTCTAAGGTATTTCAGAAACCACAGGCAAGGTGGTGCAGGGAGAGGCTGA 2475 43.92 MEVTLLKVLLSHISSFFQLSSCDNIRSEPVLKYYQNTGEILKLLKPILDAVLNSETPSEEAANKLFEELCYSVGELKELFQKWQSLSSKLYFVLLSDTLISRIQKISLDLFQFLQASHEDIFVESNSSLEQCVQKIRYVRHEQSSIVFKDALRDQVEGVAPSSEVLAKIAGCLNLRSNQEVLIEAVALEKLKENAEQAEKTGEAEYIEQMITLVTCMHERLLTMKQSENYSPVSIPPDFCCPLSLDLMTDPVIVSSGQTYERAFIKDWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPLKSVSANQPSPLLGSRNSVVHRDSPVFPYNRNYPPMSPESTRSEGSPANILSSPGRNLPQPDNSLPSVPVNVLGLDTERVSLTTSEDSVDTLEDDNLVIQSSITPLRTDYHGASGAELPQSHSRTSSSSNAVSDFPREDSEDAVASLVSTMTGCAADASAEVKVEPLKPDALTNTSQRESDPFPPKLMETRSRSHNLWRRPSDRFIPRIVSSSSSIETRPDLSGVEAQVEKLAEDLKNPSLETIRAAAADIRLLAKHNMDNRIVIAKCGVITLLVDLLTSMDAEIQEHAVTALLNLSINDNNKTIIAQANAIEPLIQVLQTGSPEAKENSAATLFSLSVIEENKIKIGRSGAIVPLVDLLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTSSNGFCSKVLQEGAVPPLVALSQSGTPRAREKAQTLLRYFRNHRQGGAGRG 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 236508 240666 + Bma028673.1 Bma09g00003 88049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00003 824 MobiDBLite consensus disorder prediction 320 377 - -
Bma09g00003 824 MobiDBLite consensus disorder prediction 430 446 - -
Bma09g00003 824 Pfam Armadillo/beta-catenin-like repeat 654 691 IPR000225 GO:0005515
Bma09g00003 824 Pfam Armadillo/beta-catenin-like repeat 611 650 IPR000225 GO:0005515
Bma09g00003 824 Pfam Armadillo/beta-catenin-like repeat 572 609 IPR000225 GO:0005515
Bma09g00003 824 SMART Ubox_2 238 301 IPR003613 GO:0004842|GO:0016567
Bma09g00003 824 Coils Coil 178 208 - -
Bma09g00003 824 SUPERFAMILY ARM repeat 541 813 IPR016024 -
Bma09g00003 824 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 820 - -
Bma09g00003 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 663 705 IPR000225 GO:0005515
Bma09g00003 824 MobiDBLite consensus disorder prediction 477 503 - -
Bma09g00003 824 SUPERFAMILY RING/U-box 222 312 - -
Bma09g00003 824 MobiDBLite consensus disorder prediction 346 377 - -
Bma09g00003 824 CDD RING-Ubox_PUB 239 281 IPR045210 -
Bma09g00003 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 581 623 IPR000225 GO:0005515
Bma09g00003 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 622 664 IPR000225 GO:0005515
Bma09g00003 824 PANTHER U BOX DOMAIN-CONTAINING 7 820 - -
Bma09g00003 824 MobiDBLite consensus disorder prediction 420 451 - -
Bma09g00003 824 Pfam U-box domain 235 305 IPR003613 GO:0004842|GO:0016567
Bma09g00003 824 Gene3D - 523 818 IPR011989 -
Bma09g00003 824 ProSiteProfiles U-box domain profile. 234 308 IPR003613 GO:0004842|GO:0016567
Bma09g00003 824 SMART arm_5 652 692 IPR000225 GO:0005515
Bma09g00003 824 SMART arm_5 570 610 IPR000225 GO:0005515
Bma09g00003 824 SMART arm_5 611 651 IPR000225 GO:0005515
Bma09g00003 824 SMART arm_5 733 773 IPR000225 GO:0005515
Bma09g00003 824 SMART arm_5 693 732 IPR000225 GO:0005515
Bma09g00003 824 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 704 745 IPR000225 GO:0005515
Bma09g00003 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 309 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01129 Bma09g00003 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01129 Bma-Chr3:14907575 Bma09g00003 Bma-Chr9:236508 0 dispersed
Bma05g00030 Bma-Chr5:1960595 Bma09g00003 Bma-Chr9:236508 1.23E-84 dispersed
Bma05g00033 Bma-Chr5:2065861 Bma09g00003 Bma-Chr9:236508 2.58E-86 dispersed
Bma05g01216 Bma-Chr5:51564668 Bma09g00003 Bma-Chr9:236508 2.39E-11 dispersed
Bma07g00027 Bma-Chr7:1236167 Bma09g00003 Bma-Chr9:236508 6.48E-71 dispersed
Bma08g00274 Bma-Chr8:3755903 Bma09g00003 Bma-Chr9:236508 3.72E-17 dispersed
Bma09g00003 Bma-Chr9:236508 Bma09g00589 Bma-Chr9:43052668 0 dispersed
Bma13g00877 Bma-Chr13:38148326 Bma09g00003 Bma-Chr9:236508 3.18E-12 dispersed
Bma13g00881 Bma-Chr13:38260235 Bma09g00003 Bma-Chr9:236508 4.64E-12 dispersed
Bma14g01113 Bma-Chr14:14018025 Bma09g00003 Bma-Chr9:236508 2.20E-13 dispersed
Bma09g00003 Bma-Chr9:236508 Bma11g00122 Bma-Chr11:1154400 1.57E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00003 - - jre:109013880 1023.46