Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00052 ATGGCGGATCACTCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACTGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGCCTCGAGACTGACGGTAGGGATTTTATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGAATGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCACTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTTTTCGTGACGAGGGACATTTTATTTATATTTCTGGTGGTTCAGCTTGAGCACTTCTGTTTTTTGCCTTGCTTGGTCTATCGGGGTGTTTTATTACATGTTATGATCGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTATGTTGCTGCCACCCTGGATTGTCATTTACCTGGCACTCTCTGTATGTGGACTGACTGTACAACTTGCTTTGAAAGTTGTGCCACTATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACGGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTCGGACAACGAATTTGGCAACGACATTATCACATTCTCGCGAAGAGAATGCTAACCAAAGTGACTGATATTCTTTTGTACTGTCAGGAGTATGTAGTCGAGGATGTGGATGGTGAGATCACGGGAACTGACTGGTCTCCTCCGCCGCTTCCACCCGAGCATGTTCAACAGCTGAAAACACTTGGTCTCCTA 873 44.56 MADHSDPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLEHFCFLPCLVYRGVLLHVMIEELEMIWLSLVENYVYVAATLDCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVTDILLYCQEYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1196818 1200054 - Bma031495 Bma09g00052 88098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00052 291 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Bma09g00052 291 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Bma09g00052 291 PANTHER BNAA04G12620D PROTEIN 1 120 - -
Bma09g00052 291 PANTHER BNAA04G12620D PROTEIN 159 291 - -
Bma09g00052 291 SMART ringv_2 33 82 IPR011016 GO:0008270
Bma09g00052 291 CDD RING_CH-C4HC3_MARCH 34 82 - -
Bma09g00052 291 SUPERFAMILY RING/U-box 30 86 - -
Bma09g00052 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
Bma09g00052 291 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 120 - -
Bma09g00052 291 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 159 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00052 Bma-Chr9:1196818 Bma11g00486 Bma-Chr11:6038818 1.12E-56 dispersed
Bma09g00052 Bma-Chr9:1196818 Bma09g00054 Bma-Chr9:1289536 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00052 - - csin:114258189 438.343