Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma09g00052 | ATGGCGGATCACTCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACTGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGCCTCGAGACTGACGGTAGGGATTTTATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGAATGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCACTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTTTTCGTGACGAGGGACATTTTATTTATATTTCTGGTGGTTCAGCTTGAGCACTTCTGTTTTTTGCCTTGCTTGGTCTATCGGGGTGTTTTATTACATGTTATGATCGAAGAGTTAGAAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTATGTTGCTGCCACCCTGGATTGTCATTTACCTGGCACTCTCTGTATGTGGACTGACTGTACAACTTGCTTTGAAAGTTGTGCCACTATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACGGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTCGGACAACGAATTTGGCAACGACATTATCACATTCTCGCGAAGAGAATGCTAACCAAAGTGACTGATATTCTTTTGTACTGTCAGGAGTATGTAGTCGAGGATGTGGATGGTGAGATCACGGGAACTGACTGGTCTCCTCCGCCGCTTCCACCCGAGCATGTTCAACAGCTGAAAACACTTGGTCTCCTA | 873 | 44.56 | MADHSDPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLEHFCFLPCLVYRGVLLHVMIEELEMIWLSLVENYVYVAATLDCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVTDILLYCQEYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1196818 | 1200054 | - | Bma031495 | Bma09g00052 | 88098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma09g00052 | 291 | Pfam | RING-variant domain | 34 | 81 | IPR011016 | GO:0008270 | |
Bma09g00052 | 291 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 26 | 88 | IPR011016 | GO:0008270 | |
Bma09g00052 | 291 | PANTHER | BNAA04G12620D PROTEIN | 1 | 120 | - | - | |
Bma09g00052 | 291 | PANTHER | BNAA04G12620D PROTEIN | 159 | 291 | - | - | |
Bma09g00052 | 291 | SMART | ringv_2 | 33 | 82 | IPR011016 | GO:0008270 | |
Bma09g00052 | 291 | CDD | RING_CH-C4HC3_MARCH | 34 | 82 | - | - | |
Bma09g00052 | 291 | SUPERFAMILY | RING/U-box | 30 | 86 | - | - | |
Bma09g00052 | 291 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 93 | IPR013083 | - | |
Bma09g00052 | 291 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 120 | - | - | |
Bma09g00052 | 291 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 159 | 291 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma09g00052 | Bma-Chr9:1196818 | Bma11g00486 | Bma-Chr11:6038818 | 1.12E-56 | dispersed | |
Bma09g00052 | Bma-Chr9:1196818 | Bma09g00054 | Bma-Chr9:1289536 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma09g00052 | - | - | csin:114258189 | 438.343 |