Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00054 ATGGCGGATCACTCTGACCCTTCGCCTCTCATGGCTCCTTCACCGATCACTGAGAAAGGGGAAATTGACCTTGAAGCTGGGCCTGGAGAACAAATTCAGTGCCGAATTTGCCTCGAGACTGACGGTAGGGATTTTATTGCTCCCTGCAAATGCAAAGGAACGTCTAAATATGTTCATAGAGAATGCTTGGATCATTGGCGAGCTGTGAAGGAAGGATTTGCTTTCGCTCACTGCACCACCTGCAAAGCTCCTTACCATTTACGAGTTTACACTTTTGCTGATAGAAAATGGCGAACACTCAAATTTCGATTTTTCGTGACGAGGGACATTTTATTTATATTTCTGGTGGTTCAGCTTGAGCACTTTTGTTTTTTGCCTTGCTTGGTCTATCGGGGTGTTTTATTACATGTTATGATCGAAGAGTTAGAAATGATTTGGCGCAGCCTTGTAGAGAATTATGTCTATGTTGCTGCCACCCTGGATTGTCATTTACCTGGCACACTCTGTATGTGGACTGACTGTACAACTTGCTTTGAAAGTTGTGCCACTATGTCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCTGGGCTACCATTACTATTTATAATGGCTTTGATTGTTCTTGGTCTTTTCACGGTGATCGGGATATTTTATAGTGTTCTAGTGGCTACTATGGTCGGACAACGAATTTGGCAACGACATTATCACATACTCGCGAAGAGAATGCTAACCAAAGTGAGTTTGGCAAAGTATTTTTTTTTTTATCATCACTTTTATGTAGTCGAGGATGTGGATGGTGAGATCACGGGAACTGACTGGTCTCCTCCACCGCTTCCACCCGAGCACGTTCAACAGCTGAAAACACTTGGTCTCCTA 882 43.88 MADHSDPSPLMAPSPITEKGEIDLEAGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVYTFADRKWRTLKFRFFVTRDILFIFLVVQLEHFCFLPCLVYRGVLLHVMIEELEMIWRSLVENYVYVAATLDCHLPGTLCMWTDCTTCFESCATMSTECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKVSLAKYFFFYHHFYVVEDVDGEITGTDWSPPPLPPEHVQQLKTLGLL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1289536 1292776 - Bma031496 Bma09g00054 88100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00054 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
Bma09g00054 294 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 156 294 - -
Bma09g00054 294 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Bma09g00054 294 SMART ringv_2 33 82 IPR011016 GO:0008270
Bma09g00054 294 CDD RING_CH-C4HC3_MARCH 34 82 - -
Bma09g00054 294 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 120 - -
Bma09g00054 294 SUPERFAMILY RING/U-box 30 86 - -
Bma09g00054 294 PANTHER BNAA04G12620D PROTEIN 156 294 - -
Bma09g00054 294 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Bma09g00054 294 PANTHER BNAA04G12620D PROTEIN 1 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00054 Bma-Chr9:1289536 Bma11g00486 Bma-Chr11:6038818 3.77E-55 dispersed
Bma09g00052 Bma-Chr9:1196818 Bma09g00054 Bma-Chr9:1289536 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00054 - - csin:114258189 432.18