Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00060 ATGACGGGAGGAGGGTCATCGGGGAGGATGCCGACGTGGAGAGAGAGGGAGAATAACAAGAGGAGAGAGAGAAGAAGGAGAGCCATTGCTGCCAAGATTTATGCTGGTTTGAGAACTCAGGGAAACTATAAGCTTCCTAAGCACTGCGATAATAACGAGGTTTTGAAAGCTCTCTGTGCTGAAGCTGGTTGGGTTGTCGAAGAAGATGGAACTACCTACAGAAAGGGATATAAGCCTCCAATGGCGGAAATTGCAGCAAATATGGCGAACCTGAGTGCTTGTTCATCGCTCCAGCCAAGCCCTCAATCTTCCTCCTTCCCTAGCCCTATACCATCCTACCCAGCCAGCCCTTCATCTTCTTCATTTCCTAGCCCTACCCGTTTCGATCAGAATCCGTCCACTTATCTTCTGCCATTTCTTCGAAACGTAGCTTCCATTTCTGCAAATCTCCCTCCTCTGAGAATATCAAACAGCGCCCCTGTAACTCCACCTCTTTCTTCTCCGACCTCGAGAGGCTCGAAGCGGAAACCAGACTGGGAATCGCTGACTAACGGATCGCTGTCCTCTTTTTGCCACCCCCTTTTTGCCGCCTCCGCTCCAGCGAGCCCCACGCGGCGGCACCATCTACCTCCGGCGACGATTCCGGAGTGCGACGAGTCCGATGCTTCCACGGTTGACTCCGGCAGGTGGGTCAGTTTTCAGACGGTCGGACCGTCGAATATTCCTACTTCTCCGACGTTCAATTTGATGAAGCCGTTGATCCAGCAGTGTTCTTTGCACGACGCCGTCGAGGGGCGAGGGCCGATGTGTTCAGACTTCGAGTTTGAGAGTGGAACTGTGAAGGCATGGGAGGGCGAGAGAATTCACGAGGTCGGCGCCGATGATTTAGAGCTCACCCTCGGAAGTGGTAAGTCCCACGGCGGCTAA 927 53.4 MTGGGSSGRMPTWRERENNKRRERRRRAIAAKIYAGLRTQGNYKLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGYKPPMAEIAANMANLSACSSLQPSPQSSSFPSPIPSYPASPSSSSFPSPTRFDQNPSTYLLPFLRNVASISANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESLTNGSLSSFCHPLFAASAPASPTRRHHLPPATIPECDESDASTVDSGRWVSFQTVGPSNIPTSPTFNLMKPLIQQCSLHDAVEGRGPMCSDFEFESGTVKAWEGERIHEVGADDLELTLGSGKSHGG 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1447336 1448472 + Bma028739.1 Bma09g00060 88106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00060 308 MobiDBLite consensus disorder prediction 1 24 - -
Bma09g00060 308 MobiDBLite consensus disorder prediction 152 180 - -
Bma09g00060 308 MobiDBLite consensus disorder prediction 94 127 - -
Bma09g00060 308 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 131 IPR008540 -
Bma09g00060 308 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 306 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bma09g00060 308 MobiDBLite consensus disorder prediction 152 172 - -
Bma09g00060 308 MobiDBLite consensus disorder prediction 104 118 - -
Bma09g00060 308 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 1 306 - -
Bma09g00060 308 MobiDBLite consensus disorder prediction 201 221 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00060 K14503 BZR1_2; brassinosteroid resistant 1/2 - jre:108995355 433.335
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00201 Bma-Chr4:1774517 Bma09g00060 Bma-Chr9:1447336 2.06E-88 dispersed
Bma09g00060 Bma-Chr9:1447336 Bma13g00924 Bma-Chr13:39682631 6.49E-43 dispersed
Bma01g02306 Bma-Chr1:80618849 Bma09g00060 Bma-Chr9:1447336 7.30E-91 wgd
Bma15g01009 Bma-Chr15:39596520 Bma09g00060 Bma-Chr9:1447336 6.76E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g920 . . . . . . Bma09g00060 . . . Cma03g00775 Cma07g00508 Car03g00704 Car07g00444 Sed14g1094 . . Bhi03g01260 Tan03g1950 Cmetu08g1008 . Hepe04g1483 . . . . . . . . . Cone8ag0795 . . . Lsi01g00704 . . . . Blo06g00124 . . . Bpe06g00056 . . . Cmo03g00806 Cmo07g00506 . . . . . . . . . . . . . . . . . . . . . . Chy02g00673 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g02306 BCT 33 318 BZR Transcription Factor Family AT1G75080 64.9 5.2e-89 324.7
Bma04g00201 BCT 32 316 BZR Transcription Factor Family AT1G75080 66.0 1.7e-87 319.7
Bma09g00060 . 28 307 BZR Transcription Factor Family AT1G75080 57.1 4.6e-77 285.0
Bma01g02306 BCT 33 316 BZR Transcription Factor Family AT1G19350 64.0 1.8e-89 326.2
Bma04g00201 BCT 32 313 BZR Transcription Factor Family AT1G19350 63.2 1.5e-83 306.6
Bma09g00060 . 28 306 BZR Transcription Factor Family AT1G19350 58.6 7.0e-78 287.7
Bma09g00060 . 2 308 BZR Transcription Factor Family AT3G50750 57.2 2.9e-77 285.4
Bma01g02306 BCT 1 313 BZR Transcription Factor Family AT3G50750 51.1 6.4e-61 231.1
Bma04g00201 BCT 3 310 BZR Transcription Factor Family AT3G50750 50.3 1.8e-55 213.0
Bma14g00977 . 77 328 BZR Transcription Factor Family AT4G18890 55.3 1.2e-54 209.9
Bma10g00457 . 123 333 BZR Transcription Factor Family AT4G18890 50.9 4.1e-44 174.9
Bma14g00977 . 1 328 BZR Transcription Factor Family AT1G78700 70.3 6.5e-113 404.1
Bma10g00457 . 1 333 BZR Transcription Factor Family AT1G78700 66.8 1.2e-106 383.3
Bma13g00924 . 1 326 BZR Transcription Factor Family AT1G78700 67.1 4.5e-98 354.8
Bma10g01198 . 25 283 BZR Transcription Factor Family AT1G78700 60.1 7.8e-66 247.7
Bma09g00060 . 28 207 BZR Transcription Factor Family AT4G36780 72.2 1.4e-60 229.9
Bma01g02306 BCT 33 212 BZR Transcription Factor Family AT4G36780 57.3 6.6e-39 157.9
Bma04g00201 BCT 32 210 BZR Transcription Factor Family AT4G36780 56.5 5.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57819 PF05687 BES1_N 4.90E-63 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00060 Bma_Chr09 FPKM 0.676259 1.590184 0.647865 0.574109 0.564242 1.053604 0.970828 0.0 0.335809 0.049781