Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00063 TATCTTCCACATTCCTTCCTTCTCCTTGAAAAACAGACGATGAAGTTAAAGCTTTTTACTGTAATGATCTTCCTTCTTCTCTCTTCTTCTTTACGAGCGTATGGTTTTGACGACGGCGAGACCTTTCTGGGTCCGGTGGTGAGGAGAGAGGAGAGGAAATCACTGGTTGTAACAGACTACGGAGAGATCTCCGCCGTCGATATCAGAGATGGAACGCGGTCGGAACCCTACCATATCCAGTTCATCACCCTGGAACCTAACTCCCTCTTTCTTCCTGTTCTTCTCCAAGCTGACATGGTCTTCTACGTTCACACTGGGAGTGGAAGGTTGCACTGGGGAGACGATGATGAGATGAGGAAGGTGAACCTAAGGCGAGGAGATGTTTACAGGCTTCATTCTGGGTCTGTGTTTTATGTGCAGAGCAATTTAGAGACCGAGAGAGAAAAGCTTAGGATCTTTGCGTTCTTTGCTAATCCAAAAGACGAATTATACGAGCGAGAAATCGGACCGTACTCGAGCATCATCGACCTAGTTCGCGGTTTTGATCGGGAAGTTCTCCGGGAAGCATTCAAGGTCTCAGAGGAGGTGATAGAAGAAATGGTAAGTGGAGTGAGGCCACCTCAAATAGTTCATGCTGTTCCGACGAAGAAGAAGAAGACTTTCTGGGAGATGGAGGCTCGGTTCTTGAAATCATTTTCAGAAGGGAGAAACTCCATTGAAAACAACAAAAAGAAGCAATCGAAGGGGTCGATGATGGGTCCGCATTGGAATCCAATGGCGAATGAGGTAGCAATAGTACTGAAAGGGAGGGGGATGGTTCGAGTTGTTCGTTCGAAAGAGAAGAACAGTACACAGTGCAGTAGTACCAGGTTTAGAGTGGAGGAGGGAGATGTATTTGCAGTTCCAAGATTCCATCCAATGGCTCAGATGTCCTTCAACAACGGATCAATGGTTTTCATGGGGTTCAGTACAACGACGAGGAGAAATCATCCACAGTTTCTAGCCGGGAAAAGCTCGGTTTTGCGAGCTTTAGACAAGGATGTTATGGCGGTTTCGTTTAATGTCAATGCGAGTGTAATTGAGCAGGTTCTGGGGAAGCAGGATGAGTCTGTCATATTGGAGTGTGTTTCTTGCGCTGAGAAAGAGGAGAGGGTAATGGAAGACGAGATAGAGAGAGAAAGGGAGGAGGCTAGAAAGAGGGAGGAAGAGGAAGCTAGGAAAAGAGAGGAGGAAGAAGAGAGGAAAAGGAGAGAGAAGAAGAAGAGGAAGCAGAAGAGAGGAAGAGGAAAGAAGAGAAGAGAAGAAGAAGAGGAAGCAAGAAGAGAGGAAGAGGAACAGAAGAGAAGAGAAGAGAAGAAGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAGGAAGCAAGAAGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAGAAGAAGAGGAAGCAAGAAGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAGGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAACAGAAGAGAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGACGTGTGA 2316 46.33 YLPHSFLLLEKQTMKLKLFTVMIFLLLSSSLRAYGFDDGETFLGPVVRREERKSLVVTDYGEISAVDIRDGTRSEPYHIQFITLEPNSLFLPVLLQADMVFYVHTGSGRLHWGDDDEMRKVNLRRGDVYRLHSGSVFYVQSNLETEREKLRIFAFFANPKDELYEREIGPYSSIIDLVRGFDREVLREAFKVSEEVIEEMVSGVRPPQIVHAVPTKKKKTFWEMEARFLKSFSEGRNSIENNKKKQSKGSMMGPHWNPMANEVAIVLKGRGMVRVVRSKEKNSTQCSSTRFRVEEGDVFAVPRFHPMAQMSFNNGSMVFMGFSTTTRRNHPQFLAGKSSVLRALDKDVMAVSFNVNASVIEQVLGKQDESVILECVSCAEKEERVMEDEIEREREEARKREEEEARKREEEEERKRREKKKRKQKRGRGKKRREEEEEARREEEEQKRREEKKKRKRNRREEKKRKRKRKRKRKRKRKRKRNRREEKKKRKQEERKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRKRNRREERRRGSKKRGRGRGRGRGRGRGRGTEEKRRGRGRGRGRGRGRGRGRGRGRGRGRGRGTEEKRRRRGRRRRGRGRGRGTEEKRRRRRRRRRGRGRGTEEKRRRRRRRRRRRGRGRGRGTEEKRRRRRRRRRRRRRGRGRGRGTEEKRRRRRRRRRRRDV 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1612204 1615017 + Bma028745.1 Bma09g00063 88109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00063 771 MobiDBLite consensus disorder prediction 430 451 - -
Bma09g00063 771 Coils Coil 376 473 - -
Bma09g00063 771 PANTHER OS03G0336100 PROTEIN-RELATED 247 423 - -
Bma09g00063 771 Gene3D Jelly Rolls 237 387 IPR014710 -
Bma09g00063 771 MobiDBLite consensus disorder prediction 387 771 - -
Bma09g00063 771 CDD cupin_7S_vicilin-like_C 247 370 - -
Bma09g00063 771 PANTHER PREPROMP73 247 423 - -
Bma09g00063 771 CDD cupin_7S_vicilin-like_N 55 218 - -
Bma09g00063 771 Gene3D Jelly Rolls 46 221 IPR014710 -
Bma09g00063 771 Pfam Cupin 60 196 IPR006045 -
Bma09g00063 771 Pfam Cupin 247 358 IPR006045 -
Bma09g00063 771 SMART Cupin_1_3 45 198 IPR006045 -
Bma09g00063 771 SMART Cupin_1_3 230 361 IPR006045 -
Bma09g00063 771 MobiDBLite consensus disorder prediction 387 417 - -
Bma09g00063 771 PANTHER OS03G0336100 PROTEIN-RELATED 15 243 - -
Bma09g00063 771 MobiDBLite consensus disorder prediction 646 771 - -
Bma09g00063 771 Coils Coil 475 510 - -
Bma09g00063 771 PANTHER PREPROMP73 15 243 - -
Bma09g00063 771 SUPERFAMILY RmlC-like cupins 54 370 IPR011051 -
Bma09g00063 771 MobiDBLite consensus disorder prediction 452 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00063 - - - jre:108995264 440.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00063 Bma-Chr9:1612204 Bma11g00156 Bma-Chr11:1429762 1.13E-12 dispersed
Bma09g00063 Bma-Chr9:1612204 Bma11g00157 Bma-Chr11:1435075 4.09E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g934 . . Bda04g00062 . . . Bma09g00063 . . . Cma03g00763 . . . Sed14g1100 . Cpe10g00599 Bhi03g01275 Tan03g1963 Cmetu08g1687 . Hepe04g1494 . . . . . . . . . . . . Cone9ag1535 Lsi01g00692 . . Cme08g00830 Blo05g00786 . . . . Bpe06g00052 . . . Cmo03g00792 . . . . . . . . . . . . . . . . . . . . . . Csa06g03224 Chy02g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012868 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00063 Bma_Chr09 FPKM 2.193333 0.500239 38.015282 37.300274 3.242696 4.608384 4.657132 20.099478 26.266026 17.459574