Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00064 ATGGCGACAGACTTGGATAATTCCTCTACTGCTTCAGGCGAAGCTAGTGTTTCATCCTCTGGAAATCAACCGCCACCCCCAAAATCAACCGCCAAGAAAAAGCGAAACCTACCAGGAATGCCAGATCCGGACGCTGAGGTAATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTCTGTGAAATTTGCAGCAAAGGTTTTCAAAGGGATCAGAATTTACAGCTGCATCGAAGAGGTCATAATCTTCCATGGAAGCTGAAGCAGCGTTCGAGTAAGGAGGTGAAGAAGAGAGTCTATGTCTGCCCCGAGTCGTCCTGTGTCCACCACGATCCTTCTCGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCGGTTCAGTCCGATTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTATAAGTGCGATTGCGGAACCTTGTTTTCCAGGAGGGATAGCTTCATCACGCACAGAGCTTTCTGCGATGCGTTGGCCGAGGAGAGCGCCAGAGCTCATACTCGTCCTCAACATCCAACCATGGCGGAGTCTGACCCAAAAGTTCATCCTCCTTTTAACACTTCACCGTCTCCGACTTCTTCAGCTCCAGTGCCGGCTGCTCCTCCGCAGTCGACCAGTGGTGTCTCGTCAGCTTTGCCGATTCAGGGTCAAGAGCTGCCGGAAAATCCCCCGCCAATTATCGAAGAAGTACTGACCGGAACAGGATCAAACGGGAGCTGTAGTAGCAGTACAAGCCCGAGCAGCCATGGCTGCTCGAGCAGTAGTGTATTCGCAAGCTTATTTGCTTCCTCAAATGCAGCCGTGAACTTACCTCAGCAACCCCCTGCCTTCACCGATCTAATCCGAGCCATGGGTAGGTCAGATCGCCCGGCTGAGCTCGCCCTTTCTTCACCAACTGAACCCATTTCTCTCTGCCTCTCAACGACCCATCACAGGCCGTCAATTTTCGTGGCCGATGGCCAGTACCCACCTCCTCTGCAGCCGCCACCCATGTCAGCCACAGCCCTTCTTCAGAAAGCTGCTCAAATGGGGGCTGTAGCCACTAATGGATCATTGCTTCGAGGGTTTGGCTTAGTCACCTCAGCTTCTTCACCTACGCAGCAAGAGAGCCTCCAATGGAGTCAGAGGCAAGTAGAGCCGGAGTCTGCAGGGCTCGGCCTGGGTCTTCCTTATGATGGAAGATCTGGATTGAAGGAGCTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACTACACTTGATTTTCTGGGTCTTGGAATGGCTGCCGGTGGGAGTCCCAGTGGCAGCCTGTCGGCATTAATCACGTCCATTGGCAGCGGTCTAGACGTTGCAGCTGCCGCCTCCCTCGAATTCTCCGGCAAAGACATGAGTAGAAACTTGTGA 1479 52.33 MATDLDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKRVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAHTRPQHPTMAESDPKVHPPFNTSPSPTSSAPVPAAPPQSTSGVSSALPIQGQELPENPPPIIEEVLTGTGSNGSCSSSTSPSSHGCSSSSVFASLFASSNAAVNLPQQPPAFTDLIRAMGRSDRPAELALSSPTEPISLCLSTTHHRPSIFVADGQYPPPLQPPPMSATALLQKAAQMGAVATNGSLLRGFGLVTSASSPTQQESLQWSQRQVEPESAGLGLGLPYDGRSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGSGLDVAAAASLEFSGKDMSRNL 492
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1635027 1637107 - Bma028746.1 Bma09g00064 88110
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00064 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 490 - -
Bma09g00064 492 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 490 - -
Bma09g00064 492 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bma09g00064 492 MobiDBLite consensus disorder prediction 193 278 - -
Bma09g00064 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bma09g00064 492 MobiDBLite consensus disorder prediction 214 228 - -
Bma09g00064 492 MobiDBLite consensus disorder prediction 262 278 - -
Bma09g00064 492 MobiDBLite consensus disorder prediction 1 45 - -
Bma09g00064 492 Gene3D Classic Zinc Finger 115 195 - -
Bma09g00064 492 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bma09g00064 492 MobiDBLite consensus disorder prediction 229 246 - -
Bma09g00064 492 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Bma09g00064 492 Gene3D Classic Zinc Finger 41 111 - -
Bma09g00064 492 SMART c2h2final6 61 83 IPR013087 -
Bma09g00064 492 SMART c2h2final6 102 132 IPR013087 -
Bma09g00064 492 SMART c2h2final6 137 157 IPR013087 -
Bma09g00064 492 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bma09g00064 Bma15g01004 BCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01853 Bma-Chr1:67717011 Bma09g00064 Bma-Chr9:1635027 8.62E-14 dispersed
Bma04g00205 Bma-Chr4:1788132 Bma09g00064 Bma-Chr9:1635027 7.52E-166 dispersed
Bma09g00064 Bma-Chr9:1635027 Bma15g01004 Bma-Chr15:39068700 0 dispersed
Bma09g00064 Bma-Chr9:1635027 Bma09g00070 Bma-Chr9:1759035 0 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57820 PF00096 zf-C2H2 0.0085 CL0361 Bma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00064 K25869 - tcc:18610967 663.299