Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00070 ATGGCGACAGACTTGGATAATTCCTCTACTGCTTCAGGCGAAGCTAGTGTTTCATCCTCTGGAAATCAACCGCCACCCCCAAAATCAACCGCCAAGAAAAAGCGAAACCTACCAGGAATGCCAGATCCGGACGCTGAGGTAATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTCTGTGAAATTTGCAGCAAAGGTTTTCAAAGGGATCAGAATTTACAGCTGCATCGAAGAGGTCATAACCTTCCATGGAAGCTGAAGCAGCGTTCGAGTAAGGAGGTGAAGAAGAGAGTCTATGTCTGCCCCGAGTCGTCCTGTGTCCACCACGATCCTTCTCGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCGGTTCAGTCCGATTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTATAAGTGCGATTGTGGAACCTTGTTTTCCAGGAGGGATAGCTTCATCACGCACAGAGCTTTCTGCGATGCGTTGGCCGAGGAGAGCGCCAGAGCTCATACTCGTCCTCAACATCCAACCATGGCGGAGTCTGACCCAAAAGTTCATCCTCCTTTTAACACTTCACCGTCGCCGACTTCTTCAGCTCCAGTGCCGGCTGCTCCTCCACAGTCGACCAGTGGTGTCTCCTCAACTTTTTCTGCCCTTTTACTCTTGTTTACAGAGCTGCCGGAAAATCCCCCGCCAATTATCGAAGAAGTACTGACCGGAACAGGATCAAACGGGAGCTGTAGTAGCAGTACAAGCCCGAGCAGCCATGGCTGCTCGAGCAGTAGTGTATTCGCAAGCTTATTCGCTTCCTCAAATGCAGCCGTGAACTTATCTCCTCAGCAACCCCCTGCCTTCACCGATCTAATCCGAGCCATGGGTAGGTCAGATCGTCCGGCTGAGCTCGCCCTTTCTTCACCAACTGAACCCATTTCTCTCTGCCTCTCAACGACCCATCACAGGCCGTCAATTTTCGTGGCCGATGGCCAGTACCCACCTCCTCTGCAGCCGCCACCCATGTCAGCCACAGCCCTTCTTCAGAAAGCTGCTCAAATGGGGGCTGTAGCCACTAATGGATCATTGCTTCGAGGGTTTGGCTTAGTCACCTCAGCTTCTTCACCTACGCAGCAAGAGAGCCTCCAATGGAGTCAGAGGCAAGTGGAGCCGGAGTCTGCAGGGCTCGGCCTGGGTCTTCCTTATGATGGAAGATCTGGATTGAAGGAGCTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACTACACTAGATTTTCTGGGTCTTGGAATGGCTGCCGGTGGGAGTCCCAGTGGCAGCCTGTCGGCATTAATCACGTCCATTGGCAGCGGTCTAGACGTTGCAGCTGCCGCCTCCCTCGAATTCTCCGGCAAAGACATGAGTAGAAACTTGTGA 1491 51.98 MATDLDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKRVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAHTRPQHPTMAESDPKVHPPFNTSPSPTSSAPVPAAPPQSTSGVSSTFSALLLLFTELPENPPPIIEEVLTGTGSNGSCSSSTSPSSHGCSSSSVFASLFASSNAAVNLSPQQPPAFTDLIRAMGRSDRPAELALSSPTEPISLCLSTTHHRPSIFVADGQYPPPLQPPPMSATALLQKAAQMGAVATNGSLLRGFGLVTSASSPTQQESLQWSQRQVEPESAGLGLGLPYDGRSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGSGLDVAAAASLEFSGKDMSRNL 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1759035 1761116 - Bma028755.1 Bma09g00070 88116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00070 496 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bma09g00070 496 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Bma09g00070 496 Gene3D Classic Zinc Finger 115 195 - -
Bma09g00070 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bma09g00070 496 MobiDBLite consensus disorder prediction 214 228 - -
Bma09g00070 496 Gene3D Classic Zinc Finger 41 111 - -
Bma09g00070 496 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Bma09g00070 496 MobiDBLite consensus disorder prediction 1 45 - -
Bma09g00070 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 494 - -
Bma09g00070 496 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 494 - -
Bma09g00070 496 MobiDBLite consensus disorder prediction 194 236 - -
Bma09g00070 496 SMART c2h2final6 61 83 IPR013087 -
Bma09g00070 496 SMART c2h2final6 137 157 IPR013087 -
Bma09g00070 496 SMART c2h2final6 102 132 IPR013087 -
Bma09g00070 496 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00070 Bma-Chr9:1759035 Bma13g01231 Bma-Chr13:45549782 1.17E-117 dispersed
Bma09g00064 Bma-Chr9:1635027 Bma09g00070 Bma-Chr9:1759035 0 proximal
Bma01g01853 Bma-Chr1:67717011 Bma09g00070 Bma-Chr9:1759035 6.90E-14 transposed
Bma04g00205 Bma-Chr4:1788132 Bma09g00070 Bma-Chr9:1759035 4.55E-162 transposed
Bma15g01004 Bma-Chr15:39068700 Bma09g00070 Bma-Chr9:1759035 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57821 PF00096 zf-C2H2 0.0086 CL0361 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00070 K25869 - tcc:18610967 659.448