Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma09g00070 | ATGGCGACAGACTTGGATAATTCCTCTACTGCTTCAGGCGAAGCTAGTGTTTCATCCTCTGGAAATCAACCGCCACCCCCAAAATCAACCGCCAAGAAAAAGCGAAACCTACCAGGAATGCCAGATCCGGACGCTGAGGTAATTGCTCTGTCTCCGAAGACTCTCATGGCGACGAATCGATTCGTCTGTGAAATTTGCAGCAAAGGTTTTCAAAGGGATCAGAATTTACAGCTGCATCGAAGAGGTCATAACCTTCCATGGAAGCTGAAGCAGCGTTCGAGTAAGGAGGTGAAGAAGAGAGTCTATGTCTGCCCCGAGTCGTCCTGTGTCCACCACGATCCTTCTCGAGCTCTGGGCGATCTCACCGGAATAAAGAAGCATTTCTGTAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCGGTTCAGTCCGATTGGAAAGCTCATTCCAAAATCTGCGGCACCAGAGAGTATAAGTGCGATTGTGGAACCTTGTTTTCCAGGAGGGATAGCTTCATCACGCACAGAGCTTTCTGCGATGCGTTGGCCGAGGAGAGCGCCAGAGCTCATACTCGTCCTCAACATCCAACCATGGCGGAGTCTGACCCAAAAGTTCATCCTCCTTTTAACACTTCACCGTCGCCGACTTCTTCAGCTCCAGTGCCGGCTGCTCCTCCACAGTCGACCAGTGGTGTCTCCTCAACTTTTTCTGCCCTTTTACTCTTGTTTACAGAGCTGCCGGAAAATCCCCCGCCAATTATCGAAGAAGTACTGACCGGAACAGGATCAAACGGGAGCTGTAGTAGCAGTACAAGCCCGAGCAGCCATGGCTGCTCGAGCAGTAGTGTATTCGCAAGCTTATTCGCTTCCTCAAATGCAGCCGTGAACTTATCTCCTCAGCAACCCCCTGCCTTCACCGATCTAATCCGAGCCATGGGTAGGTCAGATCGTCCGGCTGAGCTCGCCCTTTCTTCACCAACTGAACCCATTTCTCTCTGCCTCTCAACGACCCATCACAGGCCGTCAATTTTCGTGGCCGATGGCCAGTACCCACCTCCTCTGCAGCCGCCACCCATGTCAGCCACAGCCCTTCTTCAGAAAGCTGCTCAAATGGGGGCTGTAGCCACTAATGGATCATTGCTTCGAGGGTTTGGCTTAGTCACCTCAGCTTCTTCACCTACGCAGCAAGAGAGCCTCCAATGGAGTCAGAGGCAAGTGGAGCCGGAGTCTGCAGGGCTCGGCCTGGGTCTTCCTTATGATGGAAGATCTGGATTGAAGGAGCTGATGATGGGAAATCATTCCATTTTTGGTCCTAAGCAAACTACACTAGATTTTCTGGGTCTTGGAATGGCTGCCGGTGGGAGTCCCAGTGGCAGCCTGTCGGCATTAATCACGTCCATTGGCAGCGGTCTAGACGTTGCAGCTGCCGCCTCCCTCGAATTCTCCGGCAAAGACATGAGTAGAAACTTGTGA | 1491 | 51.98 | MATDLDNSSTASGEASVSSSGNQPPPPKSTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKRVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARAHTRPQHPTMAESDPKVHPPFNTSPSPTSSAPVPAAPPQSTSGVSSTFSALLLLFTELPENPPPIIEEVLTGTGSNGSCSSSTSPSSHGCSSSSVFASLFASSNAAVNLSPQQPPAFTDLIRAMGRSDRPAELALSSPTEPISLCLSTTHHRPSIFVADGQYPPPLQPPPMSATALLQKAAQMGAVATNGSLLRGFGLVTSASSPTQQESLQWSQRQVEPESAGLGLGLPYDGRSGLKELMMGNHSIFGPKQTTLDFLGLGMAAGGSPSGSLSALITSIGSGLDVAAAASLEFSGKDMSRNL | 496 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1759035 | 1761116 | - | Bma028755.1 | Bma09g00070 | 88116 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma09g00070 | 496 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Bma09g00070 | 496 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Bma09g00070 | 496 | Gene3D | Classic Zinc Finger | 115 | 195 | - | - | |
Bma09g00070 | 496 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Bma09g00070 | 496 | MobiDBLite | consensus disorder prediction | 214 | 228 | - | - | |
Bma09g00070 | 496 | Gene3D | Classic Zinc Finger | 41 | 111 | - | - | |
Bma09g00070 | 496 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Bma09g00070 | 496 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Bma09g00070 | 496 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 494 | - | - | |
Bma09g00070 | 496 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 1 | 494 | - | - | |
Bma09g00070 | 496 | MobiDBLite | consensus disorder prediction | 194 | 236 | - | - | |
Bma09g00070 | 496 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Bma09g00070 | 496 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Bma09g00070 | 496 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Bma09g00070 | 496 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma09g00070 | Bma-Chr9:1759035 | Bma13g01231 | Bma-Chr13:45549782 | 1.17E-117 | dispersed | |
Bma09g00064 | Bma-Chr9:1635027 | Bma09g00070 | Bma-Chr9:1759035 | 0 | proximal | |
Bma01g01853 | Bma-Chr1:67717011 | Bma09g00070 | Bma-Chr9:1759035 | 6.90E-14 | transposed | |
Bma04g00205 | Bma-Chr4:1788132 | Bma09g00070 | Bma-Chr9:1759035 | 4.55E-162 | transposed | |
Bma15g01004 | Bma-Chr15:39068700 | Bma09g00070 | Bma-Chr9:1759035 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57821 | PF00096 | zf-C2H2 | 0.0086 | CL0361 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma09g00070 | K25869 | - | tcc:18610967 | 659.448 |