Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00081 ATGGCGATTTTGGAAGATTCCATCATTAAGTCCAAACTTTCTCCGTCTAATTCGTATTCAGCTGTGGTCCTTGGTGGTACTTTTGATCGATTGCACGACGGCCATCGCCTTTTCCTCAAGGCGGCTGCGGAGCTGGCCAGGGATCGCTTAGTTGTTGGAGTTTGCGACGGTCCTATGTTGACGAACAAAAAGTTCTCAGAATTGATACAACCCATCGAGGACAGAATACATAATGTTGAAAATTACATCAAGTCCATAAAGCCAGGGCTGCAAGTACATGCTGAACCTATCATAGATCCTTATGGACCATCAATCACTGATGAAAATTTGGAGGCAATCGTTGTCAGCAAAGAGACTTTACCAGGAGGAGTTTCGGTTAATAAAAAGAGGGCTGATAAAGGACTTCCACTACTGAAGATTGAAGTTGTCGATCTATTATCTGAAGAATCAAGCGGAGGGAAGCTGAGTTCAACAACATTACGGATGCTTGAGGCAGAGAAATCAAGCAAGCAACAGCAATAG 522 43.68 MAILEDSIIKSKLSPSNSYSAVVLGGTFDRLHDGHRLFLKAAAELARDRLVVGVCDGPMLTNKKFSELIQPIEDRIHNVENYIKSIKPGLQVHAEPIIDPYGPSITDENLEAIVVSKETLPGGVSVNKKRADKGLPLLKIEVVDLLSEESSGGKLSSTTLRMLEAEKSSKQQQ 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1998722 2001056 - Bma028768.1 Bma09g00081 88127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00081 173 Gene3D HUPs 21 171 IPR014729 -
Bma09g00081 173 PANTHER DEPHOSPHO-COA KINASE-RELATED 1 172 - -
Bma09g00081 173 TIGRFAM cyt_tran_rel: cytidyltransferase-like domain 22 86 IPR004821 GO:0003824|GO:0009058
Bma09g00081 173 MobiDBLite consensus disorder prediction 149 173 - -
Bma09g00081 173 Pfam Cytidylyltransferase-like 24 94 IPR004821 GO:0003824|GO:0009058
Bma09g00081 173 SUPERFAMILY Nucleotidylyl transferase 21 163 - -
Bma09g00081 173 PANTHER PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE-LIKE ISOFORM X1 1 172 - -
Bma09g00081 173 MobiDBLite consensus disorder prediction 150 173 - -
Bma09g00081 173 CDD PPAT_CoAS 22 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00081 K02201 E2.7.7.3B; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] K02318 rcu:8273386 265.388
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g991 . . Bda04g00043 . . . Bma09g00081 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1633 . . . . . Blo05g00800 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013511 1 4 1 1 0 0 0 0 0 1 0 0 0 1 1 1 0 1 1 0 1 1 1 0 3 1 1 0 0 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00081 Bma_Chr09 FPKM 2.803406 2.928849 8.539147 7.713764 2.739034 1.715046 2.338665 1.25224 1.036185 0.966897