Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00087 ATGGACGTAGTTTCAGTCCTGCGCATGAAAGGAGGAAAGGGAGATACAAGCTATGCTACCAACTCTTCAATGCAGAAGAAGGTTATTTCAATGACAAAGCCATTGAGAGAGGAAGCCATAGCCAAGCTCTACAGCAACACCATCACGTGCTTAAACATTGCAGACTTGGGCTGTTCTTGCGGTCCCAACACATTCTTAGTGGCGTCCGACGTTATCAAAATAATGCACAATCTCAAATCAGCGACGGAAACAACATCCATGGAGTTCCGGGTCTTCTTGAACGATCTTCCTGCAAATGATTTCAATACCCTTTTCCAGTCCCTTCCGAGTTTCTTGGAGAATCTTCGGAGCCAAACCGGAGCTGGTCTCGGCCCGTGTTTCTTCACTGGAGTTCCCGGTTCTTTCTACGGCCGCCTTTTTCCGACCAATAGCCTGCACTTCGTCCACTCCTCCTACAGCCTCCATTGGATTTCGCAGGTTCCGAGAGGGATAGAGGGCAACAAAGGAAACATTTACATGTCCAAAACAAGTCCACCCAGCGTTCTCAAAGCATACTACAACCAATTTCAAAAAGATTTCTCAACATTCTTGAAATGTCGAGGAGAAGAAGTCATTAATGGCGGCTGCATGATTCTCACATTTCTCGGCCGAAGAAGTGAAGCCCGGTCTAGCAAAGACGGTTGCCATATTTGGGATCTCTTGGCCACGGCCCTCAACGAAATGGTCGCCGACGGAATCATCAACGAACATGAACTGTATGCCTTCAACATTCCAAAATACACGCCATCCCCCTCTGAAGTGGAAATCGAGGTCGTAAGAGAAGGATCGTTTGTCGTTGATCGACTCGAAGTTTCAAGTATAAGTTGGAACGGGTATTACGAAGAAGATCAAATGAACTTGTCGAACGAGTTTTTTGAAAGTGGTTCTTACGTCGAGAAGTATACGAGGGCCGTAACCGAGTCTTTGCTTGCTAGTCATTTTGGGGAAGCCATTATAGACGATGTGTTTTGCAGATTCAGAAGGATTGTTGCAGAGTGCATGAAGAAGGAGAAGCCTGAGTTTACAAACATCACTGTTTCTTTGACTAGAAAAGAATTGACCTAA 1104 45.74 MDVVSVLRMKGGKGDTSYATNSSMQKKVISMTKPLREEAIAKLYSNTITCLNIADLGCSCGPNTFLVASDVIKIMHNLKSATETTSMEFRVFLNDLPANDFNTLFQSLPSFLENLRSQTGAGLGPCFFTGVPGSFYGRLFPTNSLHFVHSSYSLHWISQVPRGIEGNKGNIYMSKTSPPSVLKAYYNQFQKDFSTFLKCRGEEVINGGCMILTFLGRRSEARSSKDGCHIWDLLATALNEMVADGIINEHELYAFNIPKYTPSPSEVEIEVVREGSFVVDRLEVSSISWNGYYEEDQMNLSNEFFESGSYVEKYTRAVTESLLASHFGEAIIDDVFCRFRRIVAECMKKEKPEFTNITVSLTRKELT 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2305771 2307602 - Bma028778.1 Bma09g00087 88133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00087 367 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 364 IPR029063 -
Bma09g00087 367 Gene3D - 6 350 IPR042086 -
Bma09g00087 367 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 1 363 IPR005299 GO:0008168
Bma09g00087 367 PANTHER SAM DEPENDENT CARBOXYL METHYLTRANSFERASE-RELATED 1 363 - -
Bma09g00087 367 Pfam SAM dependent carboxyl methyltransferase 39 363 IPR005299 GO:0008168
Bma09g00087 367 Gene3D Vaccinia Virus protein VP39 21 351 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00087 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - tcc:18610878 466.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00982 Bma-Chr3:10487711 Bma09g00087 Bma-Chr9:2305771 3.25E-97 dispersed
Bma15g00698 Bma-Chr15:12574182 Bma09g00087 Bma-Chr9:2305771 1.42E-85 dispersed
Bma15g00701 Bma-Chr15:12669599 Bma09g00087 Bma-Chr9:2305771 8.04E-89 dispersed
Bma09g00086 Bma-Chr9:2143985 Bma09g00087 Bma-Chr9:2305771 0 tandem
Bma09g00087 Bma-Chr9:2305771 Bma09g00088 Bma-Chr9:2354875 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1013 . . . . . . Bma09g00087 . . . . . . . . . . . . . . . . . Cla01g01929 Cam01g2014 Cec04g1672 Cco04g1736 Clacu01g2035 Cmu01g1910 Cre04g1587 . Cone12ag0775 . . . . . . Blo05g00805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03263 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00087 Bma_Chr09 FPKM 6.055286 7.604623 17.184172 18.842064 7.605267 7.423048 6.408576 22.206646 22.19356 21.589281