Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00088 ATGCACAATCTCAAATCAGCAACAAAAACAACATCCATGGAGTTCCGGGTCTTCTTGAACGATCTTCCTGCAAATGATTTCAATACCCTTTTCCAGTCCCTTCCGAGTTTCTTGGAGAATCTCCGGAGCCAAACCGGAGCTGGTCTCGGCCCATGTTTCTTCACTGGAGTTCCCGGTTCTTTCTACGGCCGCCTTTTTCCGACCAATAGCCTGCACTTCGTCCACTCCTCCTACAGCCTCCATTGGATTTCACAGGTTCCGAGAGGGATAGAGGGCAACAAAGGAAACATTTACATGTCCAAAACAAGTCCACCCAGCGTTCTCAAAGCATACTACAACCAATTTCAAAAAGATTTCTCAACATTCTTGAAATGTCGAGGAGAAGAAGTCATTAATGGCGGCTGCATGATTCTCACATTTCTCGGCCGAAGAAGTGAAGCCCCGTCTAGCAAAGACGGTTGCCATATTTGGGATCTCTTGGCCACGACCCTCAACGAAATGGTCGCCGACGGAATCATCAACGAACATGAACTCTATGCCTTCAACATTCCAAAATACACGCCATCCCCCTCTGAAGTGGAAATCGAGGTCGTAAAAGAAGGATCGTTTGTCGTTGATCGACTCGAAGTTTCAAGTATAAGTTGGAACGGGTATTATGAGGAAGATCAAATGAACTTGTCGAACGAGTTTTTTGAAAGTGGTTCTTACGTCGAGAAGTATACGAGGGCCGTGACCGAGTCTTTGCTTGCTAGTCATTTTGGGGAAGCTGTTATAGACGATGTGTTTTGCAGATTCAGAAGGATTGTTGCATAG 813 45.88 MHNLKSATKTTSMEFRVFLNDLPANDFNTLFQSLPSFLENLRSQTGAGLGPCFFTGVPGSFYGRLFPTNSLHFVHSSYSLHWISQVPRGIEGNKGNIYMSKTSPPSVLKAYYNQFQKDFSTFLKCRGEEVINGGCMILTFLGRRSEAPSSKDGCHIWDLLATTLNEMVADGIINEHELYAFNIPKYTPSPSEVEIEVVKEGSFVVDRLEVSSISWNGYYEEDQMNLSNEFFESGSYVEKYTRAVTESLLASHFGEAVIDDVFCRFRRIVA 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2354875 2355857 - Bma028779.3 Bma09g00088 88134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00088 270 Pfam SAM dependent carboxyl methyltransferase 5 269 IPR005299 GO:0008168
Bma09g00088 270 Gene3D - 85 269 IPR042086 -
Bma09g00088 270 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 269 IPR029063 -
Bma09g00088 270 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 269 IPR005299 GO:0008168
Bma09g00088 270 PANTHER BENZOATE CARBOXYL METHYLTRANSFERASE-LIKE 2 269 - -
Bma09g00088 270 Gene3D Vaccinia Virus protein VP39 6 214 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00088 K21483 SAMT; salicylate 1-O-methyltransferase [EC:2.1.1.274] - tcc:18610878 362.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00086 Bma-Chr9:2143985 Bma09g00088 Bma-Chr9:2354875 0 dispersed
Bma09g00088 Bma-Chr9:2354875 Bma03g00940 Bma-Chr3:9921252 1.38E-82 dispersed
Bma09g00087 Bma-Chr9:2305771 Bma09g00088 Bma-Chr9:2354875 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1015 . . . . . . Bma09g00088 . . . . . . . . . . . . . . . . . Cla01g01930 Cam01g2015 . Cco04g1737 Clacu01g2036 Cmu01g1911 Cre04g1588 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03264 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00088 Bma_Chr09 FPKM 2.352299 1.963646 336.898468 346.219604 10.048987 9.282844 9.326392 47.705215 49.272552 46.648769