Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00096 ATGGCTGGGTTTTTCTCTTTAGGCGGAGGGAGAGGATCGGAAAATAACCAGTATCGGCGGGATGAAGAACAAACCAACCCTCCACACGAAATTAATCCAGAGAGTTTGTTTTGGTACAAGAACAGCGAAGATGTACCATCTTCCAAAAGCTTTGAGCTATGGCAGAATCAAAATGTCTACTCATCCGAAGCGGGTCCCAGCCGGAGCGGCCTGAACATTTCCGATGAGTCTCCGGCTAGATCAACTTTCATGATGACCATGTCGACCGGCATAAGTACGATGAGTTGCCAAGACTGTGGGAATCAGGCGAAAAAGGATTGCGTTCATATGCGATGTAGGACTTGCTGTAAGAGCCGAGGGTTCGACTGCCATACGCACGTTAGAAGCACTTGGAATCCGGCTTCTAAGCGCCGGGAGCGGCTTACTCAGCTCGTTGTTGATGTGCAGAATCATGGCCGAGGAGAGACGACGAAACGGCTCAGAGAGCACCCATCGTCTTCCTCCTCGCTGGCCTGCACACGTATTCCAGCTAACTCCTCAGAGGAGGCGGCTTTTCCGGCGGAAGTGAACTCGTCGGCGGTTTTTCGGTGCGTTCGAGTGAGCTCAATGGAAGAACCGGACGACCAGTATGCGTACCAGACTGCTGTGAACATCGGCGGCCATGTTTTCAAGGGTATTCTCTACGATCAAGGGCCGGACATGGTAAACTACATTCCCGGCGAGAGTTCCTACCGGCGCCGGGAGTGGACTCCAACCACTTAA 762 52.49 MAGFFSLGGGRGSENNQYRRDEEQTNPPHEINPESLFWYKNSEDVPSSKSFELWQNQNVYSSEAGPSRSGLNISDESPARSTFMMTMSTGISTMSCQDCGNQAKKDCVHMRCRTCCKSRGFDCHTHVRSTWNPASKRRERLTQLVVDVQNHGRGETTKRLREHPSSSSSLACTRIPANSSEEAAFPAEVNSSAVFRCVRVSSMEEPDDQYAYQTAVNIGGHVFKGILYDQGPDMVNYIPGESSYRRREWTPTT 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2564937 2566097 - Bma028789.1 Bma09g00096 88142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00096 253 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 95 137 IPR006510 -
Bma09g00096 253 Pfam Domain of unknown function (DUF702) 93 233 - -
Bma09g00096 253 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 241 IPR007818 GO:0003700|GO:0006355
Bma09g00096 253 PANTHER PROTEIN SHORT INTERNODES 1 241 - -
Bma09g00096 253 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 184 232 IPR006511 -
Bma09g00096 253 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00977 Bma09g00096 CCT
Bma03g00977 Bma09g00096 ECH
Bma09g00096 Bma15g00973 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00096 Bma-Chr9:2564937 Bma14g00754 Bma-Chr14:8388277 3.95E-45 dispersed
Bma01g02345 Bma-Chr1:81040150 Bma09g00096 Bma-Chr9:2564937 3.71E-72 wgd
Bma15g00973 Bma-Chr15:37616023 Bma09g00096 Bma-Chr9:2564937 3.00E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57822 PF05142 DUF702 9.50E-61 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00096 - - jre:108993505 288.115