Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00098 ATGGGTCGTGGAAAGATCGAGATCAAGCTGATCGAAAACTCCACAAACAGGCAGGTCACCTACTCCAAACGAAGAAATGGTATTTTCAAGAAAGCTAAAGAACTGGCTGTTCTTTGCGATGCTAAGGTCTCTCTTTTGATGTTCTCTGATACTGGCAAGCTTCAAGAGTATACTAGCCCTAACATCACAATAAAGAAGATCTACGATCAGTATCAGAGTGTTAAAGGGATTGATCTGTGGAGCACACACTATAAGAGAATGGAAGAAAACTTGAGGAGGTTGAAGGAAATCAACTACAACTTGAGGAGGGAGATCAGGCAGAGGATAGGCAAAGATTTGAACGATCTTGACTACAAGCAACTCCATAGTCTTGAGCAAAACATATCCTCTCCCTTGAAAGCCATACGCGAGCGAAAGGTTCAGTTCCTTAACTTCTGA 438 42.24 MGRGKIEIKLIENSTNRQVTYSKRRNGIFKKAKELAVLCDAKVSLLMFSDTGKLQEYTSPNITIKKIYDQYQSVKGIDLWSTHYKRMEENLRRLKEINYNLRREIRQRIGKDLNDLDYKQLHSLEQNISSPLKAIRERKVQFLNF 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2633901 2634675 + Bma028792.1 Bma09g00098 88144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00098 145 ProSiteProfiles K-box domain profile. 84 145 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma09g00098 145 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 141 - -
Bma09g00098 145 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 141 - -
Bma09g00098 145 Coils Coil 84 104 - -
Bma09g00098 145 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bma09g00098 145 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bma09g00098 145 Pfam K-box region 81 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma09g00098 145 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma09g00098 145 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02084 Bma-Chr1:76428846 Bma09g00098 Bma-Chr9:2633901 6.56E-42 dispersed
Bma01g02089 Bma-Chr1:76663749 Bma09g00098 Bma-Chr9:2633901 1.11E-42 dispersed
Bma04g00225 Bma-Chr4:1918926 Bma09g00098 Bma-Chr9:2633901 3.35E-56 dispersed
Bma09g00098 Bma-Chr9:2633901 Bma02g00452 Bma-Chr2:6954226 1.04E-31 dispersed
Bma01g02346 Bma-Chr1:81048997 Bma09g00098 Bma-Chr9:2633901 2.24E-51 wgd
Bma15g00963 Bma-Chr15:36735011 Bma09g00098 Bma-Chr9:2633901 1.05E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57823 PF01486 K-box 6.00E-14 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00098 K09264 - twl:120002789 209.92