Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00099 ATGGCGTCGGTTGCTCCAGTTTCTTCATGGATCCCCGAAGATGATATTCTTTTGAAGAACGCTGTCGAGGCAGGAGCTTCATTAGAAGCACTTGCTAAAGGTGCTGTGCATTTCTCTCGGAAATTTACGGTTCGAGAACTTCAAGATCGTTGGCGTTCTCTCTTGTATGACCCAGTTATTTCAGCTGAAGCTTCTGGTCGTATGCTTGAGTTTGAACTATCTGCTCCTAATGATTTGTCCAAGAGCCACCGATTTAATAACTCAAGAGAAATCACGGCAAAAAGAAAGCCAGAAAGCATTCATAGCCTGTATTATAGAATGAGGAAAAGAATGTATAATCAAGCTGTTAATCCTTTCGATCTAGGTTTTCTTGGTTCGCCAAACTATACTGCTTGCACTGGAAACGGAGGTGATAGTGAAAGAGTTGGAATGGATGTTGATAATAATTTAATTGATTATGGGAATTGTATGGGGCCACATTCTCATGGCTTTCCAGACATTCCTGTGTTGAAAAGGAGGGAAGACGTTTCAAAAGCTGGTTGGGAAAGTGATCAGGATGTCCAAGAGATGCAAGGGGGTGTTCAGATTGCAGTGGAAGCAATTGGTTCATCAGACATTTTAGGTTATGACATTTCTGATCATCCTGATTCGCTTTTGAACATTCCAAATGAAGATGAGATTCTATTTATGGAGTTTGATGGCAAAGGTGTGATGGAAGAGGCTGTTGATTCACTTTTGCTGAACTCTCCGACTGTTTACTCAAAAGATACATCAGACGCTGATGAACATCAAGCCTTAGTTTCTAACAAAGACCATCTTCTTCCTGAAGATTTAAGCACTCTGGTGTTAGTAGATATAACAGATTTCCCGCCAGATTCTGTTCATGGCAGTCATGAAACACTTTGTCATCCTGATGATAATAGGCAATCCTTGACATTTGCACCATCATCCCATTCTCCTCTTAATCAAGGAGAAATCAATTGTATATTGAACAGCGAGGACCTGGAAATCCCATGCAATGAAGATATGTTTCCTTCCAAAACTATCAGACCTAGTTTTGTAGACGACACAGATTTATTTTCTTCATCTGTTCGTCCAAAAAATCATGAACTAGAAATGACTCTGAAGAGAGAAGACAATCCTAAACAGTTGGGCCTCGTTGCTCGTATTCTAGAATCAGATATTTTATCAAAATCAAGTCCAAATGATCGACCATTCAATCATGAAGTAAAAAAAGAAAATCGTGATGGTTACTGTCTTTCTGCTATGACCAGACATGTTAACAGTTTTCCTTCCAGTCCTAAGACTTGCATGGTAGAGCATGGAACTTCAAAGAGTGCCACTTCAAATGTCCTAAAAGAAGAGGATGGTCAATCTGCAGTTGGGGAACAAGTAATTCTGCTTGTTGACCCAGGATCTTCAAGAGCAGCAGTTGGAGAATCTGAAGGAAATACGTCAACGCTAGATCTTGAAGAACTTGATACGCATGATAATTTTCCTTCCTTTTCTGACATTGAAGCTATGATACTTGAAATGGATTTATGGCCAAATGATCATGAGTTATACGTCAACAAAGAAGTCTTAAGATGTCAGCATGAGGATACTAAAAGGAAAATCATGAGGCTCGAACAATGTGCTAGATCAGCCACACAAAGAACCATAGCATCAAAAGGTGCATTTGCTATCCTGTATGGCCGTCATGTGAAGCATTATATCAAGAAAGCAGAGGTCATGCTTGGTAGATCAACAAATGACTATAAAGTTGACATTGACTTAAGAAGAGAAGGGCGTGCCAACCAAATATCAAGGCGCCAGGCCGTCATACGGATGCAAAAAGATGGTTCTTTTGTTCTAAAAAACCATGGCAAGAATCCCGTCTTTATAAACGGAAAGGAAGTTGGTACTGGACAGCTCCGTAGTCTTAGTTCCAATAGCTTGATCGAGCTTCGGGAAATAGCTCTTGTTTTTGAAACCAATCCGAATTCCGTGAGGCAGTATCTTACAAAATTAACAAGGAACAAACTAAGCAATTCATAA 2037 39.96 MASVAPVSSWIPEDDILLKNAVEAGASLEALAKGAVHFSRKFTVRELQDRWRSLLYDPVISAEASGRMLEFELSAPNDLSKSHRFNNSREITAKRKPESIHSLYYRMRKRMYNQAVNPFDLGFLGSPNYTACTGNGGDSERVGMDVDNNLIDYGNCMGPHSHGFPDIPVLKRREDVSKAGWESDQDVQEMQGGVQIAVEAIGSSDILGYDISDHPDSLLNIPNEDEILFMEFDGKGVMEEAVDSLLLNSPTVYSKDTSDADEHQALVSNKDHLLPEDLSTLVLVDITDFPPDSVHGSHETLCHPDDNRQSLTFAPSSHSPLNQGEINCILNSEDLEIPCNEDMFPSKTIRPSFVDDTDLFSSSVRPKNHELEMTLKREDNPKQLGLVARILESDILSKSSPNDRPFNHEVKKENRDGYCLSAMTRHVNSFPSSPKTCMVEHGTSKSATSNVLKEEDGQSAVGEQVILLVDPGSSRAAVGESEGNTSTLDLEELDTHDNFPSFSDIEAMILEMDLWPNDHELYVNKEVLRCQHEDTKRKIMRLEQCARSATQRTIASKGAFAILYGRHVKHYIKKAEVMLGRSTNDYKVDIDLRREGRANQISRRQAVIRMQKDGSFVLKNHGKNPVFINGKEVGTGQLRSLSSNSLIELREIALVFETNPNSVRQYLTKLTRNKLSNS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2700662 2707683 + Bma028795.1 Bma09g00099 88145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00099 678 CDD FHA 573 657 IPR000253 GO:0005515
Bma09g00099 678 PANTHER FHA DOMAIN PROTEIN 1 133 - -
Bma09g00099 678 Gene3D - 526 669 - -
Bma09g00099 678 PANTHER MICROSPHERULE PROTEIN 1 200 674 IPR037912 GO:0002151|GO:0031011|GO:0071339
Bma09g00099 678 SMART FHA_2 576 633 IPR000253 GO:0005515
Bma09g00099 678 PANTHER MICROSPHERULE PROTEIN 1 1 133 IPR037912 GO:0002151|GO:0031011|GO:0071339
Bma09g00099 678 Pfam N-terminal region of micro-spherule protein 10 72 IPR025999 -
Bma09g00099 678 SUPERFAMILY SMAD/FHA domain 565 658 IPR008984 GO:0005515
Bma09g00099 678 ProSiteProfiles Forkhead-associated (FHA) domain profile. 577 633 IPR000253 GO:0005515
Bma09g00099 678 Pfam FHA domain 578 649 IPR000253 GO:0005515
Bma09g00099 678 PANTHER FHA DOMAIN PROTEIN 200 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00099 - - - qsu:112033589 472.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02353 Bma-Chr1:81158016 Bma09g00099 Bma-Chr9:2700662 4.12E-28 dispersed
Bma01g02347 Bma-Chr1:81054000 Bma09g00099 Bma-Chr9:2700662 1.21E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1068 . . Bda04g00031 . . . Bma09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1662 Cone9ag1585 . . . . Blo05g00819 . . . . Bpe06g00029 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001875 2 6 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 11 13 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00099 Bma_Chr09 FPKM 7.760473 7.932793 7.320386 6.751707 41.585186 40.251373 35.974953 9.433494 8.894026 7.733058