Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00103 ATGGCGTCATCCGCGACTGACACTCAGGTTAGGGCATCCCACATCCTGATTAAGCACCAGGGTTCCAGACGTCCCGCTTCCTGGAAAGATCCCGATGGCCGAGTTATCAAAATTACAACCAAGGAGAGCGCCGCCTCTCAGCTGAAAGTTATTCGAGACGATATCTTATCTGGAAATGCCAAGTTTGATGACCTCGCTTCTCGCCTCTCCGACTGTAGCTCCGCCAAACGCGGCGGCGATCTTGGTCGATTTGGACGTGGGCAGATGCAGAAACCTTTTGAAGAAGCGACTTACGGGCTTAAAGTCGGTGAGATAAGTGACATTGTGGATACAGATAGCGGCCTTCACATCATTCTAAGAACTGGTTGA 369 50.95 MASSATDTQVRASHILIKHQGSRRPASWKDPDGRVIKITTKESAASQLKVIRDDILSGNAKFDDLASRLSDCSSAKRGGDLGRFGRGQMQKPFEEATYGLKVGEISDIVDTDSGLHIILRTG 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2768079 2769735 - Bma028799.1 Bma09g00103 88149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00103 122 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 3 122 - -
Bma09g00103 122 ProSitePatterns PpiC-type peptidyl-prolyl cis-trans isomerase signature. 62 82 IPR023058 -
Bma09g00103 122 MobiDBLite consensus disorder prediction 1 15 - -
Bma09g00103 122 MobiDBLite consensus disorder prediction 1 31 - -
Bma09g00103 122 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 3 122 - -
Bma09g00103 122 SUPERFAMILY FKBP-like 7 121 - -
Bma09g00103 122 ProSiteProfiles PpiC-type peptidyl-prolyl cis-trans isomerase family profile. 7 122 IPR000297 GO:0003755
Bma09g00103 122 Pfam PPIC-type PPIASE domain 14 120 IPR000297 GO:0003755
Bma09g00103 122 Gene3D - 4 122 IPR046357 GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00103 K09578 PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [EC:5.2.1.8] - pop:7480175 204.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00691 Bma-Chr6:36931618 Bma09g00103 Bma-Chr9:2768079 1.32E-14 dispersed
Bma06g00703 Bma-Chr6:37252266 Bma09g00103 Bma-Chr9:2768079 1.43E-10 dispersed
Bma09g00103 Bma-Chr9:2768079 Bma09g00107 Bma-Chr9:2934549 1.15E-86 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1096 . . Bda04g00026 . . . Bma09g00103 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0840 . . . . . . . Blo05g00825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008577 1 1 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00103 Bma_Chr09 FPKM 8.040159 8.032376 9.516557 8.301192 15.265489 14.70911 12.306542 9.406939 8.309679 11.557702