Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00128 ATGGAGTTTGACGACCAAGAGGAGCATGACGAAGAGATGGCGAGCTTCGACTCGCTCGGAAACTCGGGGTCAAGGGTGAAAATGGCGAACTTGGAAGCTACGAGTCCGCAGAGTAGGAAGCCGAGTTACAGAGAGTGTTTGAAGAATCACGCCGTCGGCATCGGTGGCCATGCCCTCGATGGCTGCGGTGAGTTTATGCCGGCCGGAGCAGAAGGAACGCTGGATGGGCTCAAATGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGAAAAGAGACTGACGCCGGAATAGCAGTCGGAGACCATTTCCTTCTCCCTCACCATCCCCACCCGCAGTTCTCACCTTACTACCGAACTCCGGCGGGGTACCTCCACGTCGCACATCACCAGAGGCCGCTGGCCCTTCCATCGACGTCAGGCGGCGGAGGAAGCCATAGCCGGGAGGATCAGGAGGACATTTCCAACCCAAAAGGCGGCCATGGAGGCAGCGGAAGCGGAGCTTTTGGGAAGAAAAGATTCAGAACGAAGTTCAGTCAAGATCAGAAAGAGAGAATGCTGGGTCTAGCAGAAAGACTCGGATGGAGGATTCAGAGACACGACGACGCCATCGTTCAGCAGTTCTGCAACGAAACAGGGGTTAAACGACAGGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTCGGAAAAAAACCCTAA 702 55.13 MEFDDQEEHDEEMASFDSLGNSGSRVKMANLEATSPQSRKPSYRECLKNHAVGIGGHALDGCGEFMPAGAEGTLDGLKCAACNCHRNFHRKETDAGIAVGDHFLLPHHPHPQFSPYYRTPAGYLHVAHHQRPLALPSTSGGGGSHSREDQEDISNPKGGHGGSGSGAFGKKRFRTKFSQDQKERMLGLAERLGWRIQRHDDAIVQQFCNETGVKRQVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3877661 3878362 + Bma028840.1 Bma09g00128 88174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00128 233 Pfam ZF-HD protein dimerisation region 42 93 IPR006456 -
Bma09g00128 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Bma09g00128 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 232 - -
Bma09g00128 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Bma09g00128 233 MobiDBLite consensus disorder prediction 1 42 - -
Bma09g00128 233 MobiDBLite consensus disorder prediction 17 42 - -
Bma09g00128 233 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 43 92 IPR006456 -
Bma09g00128 233 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 170 226 IPR006455 -
Bma09g00128 233 Gene3D - 156 231 - -
Bma09g00128 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 26 232 - -
Bma09g00128 233 MobiDBLite consensus disorder prediction 133 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00128 - - - csv:101204784 352.443
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02594 Bma-Chr1:83562057 Bma09g00128 Bma-Chr9:3877661 1.90E-82 dispersed
Bma05g00124 Bma-Chr5:3902942 Bma09g00128 Bma-Chr9:3877661 4.08E-49 dispersed
Bma09g00128 Bma-Chr9:3877661 Bma12g00035 Bma-Chr12:912067 8.37E-58 dispersed
Bma09g00128 Bma-Chr9:3877661 Bma03g00988 Bma-Chr3:10644405 3.14E-56 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57826 PF04770 ZF-HD_dimer 5.10E-29 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00128 Bma_Chr09 FPKM 0.0 0.0 0.0 6.472355 0.0 17.758287 0.0 0.0 0.0 0.0