Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00128 ATGGAGTTTGACGACCAAGAGGAGCATGACGAAGAGATGGCGAGCTTCGACTCGCTCGGAAACTCGGGGTCAAGGGTGAAAATGGCGAACTTGGAAGCTACGAGTCCGCAGAGTAGGAAGCCGAGTTACAGAGAGTGTTTGAAGAATCACGCCGTCGGCATCGGTGGCCATGCCCTCGATGGCTGCGGTGAGTTTATGCCGGCCGGAGCAGAAGGAACGCTGGATGGGCTCAAATGCGCCGCCTGCAACTGCCACCGGAACTTCCACCGAAAAGAGACTGACGCCGGAATAGCAGTCGGAGACCATTTCCTTCTCCCTCACCATCCCCACCCGCAGTTCTCACCTTACTACCGAACTCCGGCGGGGTACCTCCACGTCGCACATCACCAGAGGCCGCTGGCCCTTCCATCGACGTCAGGCGGCGGAGGAAGCCATAGCCGGGAGGATCAGGAGGACATTTCCAACCCAAAAGGCGGCCATGGAGGCAGCGGAAGCGGAGCTTTTGGGAAGAAAAGATTCAGAACGAAGTTCAGTCAAGATCAGAAAGAGAGAATGCTGGGTCTAGCAGAAAGACTCGGATGGAGGATTCAGAGACACGACGACGCCATCGTTCAGCAGTTCTGCAACGAAACAGGGGTTAAACGACAGGTTCTTAAAGTTTGGATGCATAACAACAAGCACACTCTCGGAAAAAAACCCTAA 702 55.13 MEFDDQEEHDEEMASFDSLGNSGSRVKMANLEATSPQSRKPSYRECLKNHAVGIGGHALDGCGEFMPAGAEGTLDGLKCAACNCHRNFHRKETDAGIAVGDHFLLPHHPHPQFSPYYRTPAGYLHVAHHQRPLALPSTSGGGGSHSREDQEDISNPKGGHGGSGSGAFGKKRFRTKFSQDQKERMLGLAERLGWRIQRHDDAIVQQFCNETGVKRQVLKVWMHNNKHTLGKKP 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3877661 3878362 + Bma028840.1 Bma09g00128 88174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00128 233 Pfam ZF-HD protein dimerisation region 42 93 IPR006456 -
Bma09g00128 233 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 43 92 IPR006456 -
Bma09g00128 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 26 232 - -
Bma09g00128 233 SUPERFAMILY Homeodomain-like 157 231 IPR009057 -
Bma09g00128 233 MobiDBLite consensus disorder prediction 1 42 - -
Bma09g00128 233 MobiDBLite consensus disorder prediction 17 42 - -
Bma09g00128 233 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 43 92 IPR006456 -
Bma09g00128 233 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 170 226 IPR006455 -
Bma09g00128 233 Gene3D - 156 231 - -
Bma09g00128 233 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 26 232 - -
Bma09g00128 233 MobiDBLite consensus disorder prediction 133 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02594 Bma-Chr1:83562057 Bma09g00128 Bma-Chr9:3877661 1.90E-82 dispersed
Bma05g00124 Bma-Chr5:3902942 Bma09g00128 Bma-Chr9:3877661 4.08E-49 dispersed
Bma09g00128 Bma-Chr9:3877661 Bma12g00035 Bma-Chr12:912067 8.37E-58 dispersed
Bma09g00128 Bma-Chr9:3877661 Bma03g00988 Bma-Chr3:10644405 3.14E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57826 PF04770 ZF-HD_dimer 5.10E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00128 - - csv:101204784 352.443