Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00185 ATGTCTACAGATTCCTTTCCTCTTCGTCTTCCCAAGAACCGAGCTCTTCTCTCCGCCTTCTGCCCCAAATTGATACTGGAGCAAATGTGCCATTTCGCTCTTTCTGCTGTTATCGGAAGCATCCTCTCTGCCATTCTCACCTTCTTCTTTGCTTTAGTGGGCACCTTGTTAGGGGCGATGACTGGGGCAGTGATAGGGCAAGAAACCGAGAGTGGTTTTGTGCGTGGGGCTGCGGTGGGAGCAATATCAGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCATCCCTAGTTATCTGGAAATCGGATGAATCCAGAATAGGCTGCGTTCTCTACCTGATTGATGTCATTGTGAGCCTCCTTAGTGGAAGACTAGTTCGAGAAAGGATTGGCCCTGCCATGCTAAGTGCAGTGCAAAGTCAGATGGGTGCCATTGAGAGCTTTGAAGATGTCTCAAACATTTTTGACACGAGCAGTGGAAAAGGACTGCCAGGAGACTCTGTTGAAAAAATTCCAAAACTCATAATTTCTTTCACCAACAACGTGGATGCTTCCTGTTCAGTTTGCCTTCAGGATTTTCAGCTGGGAGAGACGGTAAGAAGCTTACCTCAATGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTTCTAAGACATGGCTCTTGCCCACTATGCAGAAGAGATCTTTGA 693 46.46 MSTDSFPLRLPKNRALLSAFCPKLILEQMCHFALSAVIGSILSAILTFFFALVGTLLGAMTGAVIGQETESGFVRGAAVGAISGAVFSIEVFESSLVIWKSDESRIGCVLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAIESFEDVSNIFDTSSGKGLPGDSVEKIPKLIISFTNNVDASCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLLRHGSCPLCRRDL 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7221804 7223597 - Bma028925.1 Bma09g00185 88231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00185 230 Pfam Ring finger domain 184 227 IPR001841 -
Bma09g00185 230 ProSiteProfiles Zinc finger RING-type profile. 185 227 IPR001841 -
Bma09g00185 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 7 230 IPR044523 -
Bma09g00185 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 230 IPR013083 -
Bma09g00185 230 CDD RING-H2_PA-TM-RING 185 227 - -
Bma09g00185 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 7 230 - -
Bma09g00185 230 Pfam YMGG-like Gly-zipper 51 86 IPR027367 -
Bma09g00185 230 SMART ring_2 185 226 IPR001841 -
Bma09g00185 230 SUPERFAMILY RING/U-box 175 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00083 Bma-Chr6:1321675 Bma09g00185 Bma-Chr9:7221804 2.06E-118 dispersed
Bma07g01295 Bma-Chr7:48570884 Bma09g00185 Bma-Chr9:7221804 1.32E-22 dispersed
Bma09g00185 Bma-Chr9:7221804 Bma14g00336 Bma-Chr14:4188521 3.30E-26 dispersed
Bma09g00185 Bma-Chr9:7221804 Bma03g00946 Bma-Chr3:10025418 2.34E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00185 - - fve:101312761 353.599