Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma09g00185 | ATGTCTACAGATTCCTTTCCTCTTCGTCTTCCCAAGAACCGAGCTCTTCTCTCCGCCTTCTGCCCCAAATTGATACTGGAGCAAATGTGCCATTTCGCTCTTTCTGCTGTTATCGGAAGCATCCTCTCTGCCATTCTCACCTTCTTCTTTGCTTTAGTGGGCACCTTGTTAGGGGCGATGACTGGGGCAGTGATAGGGCAAGAAACCGAGAGTGGTTTTGTGCGTGGGGCTGCGGTGGGAGCAATATCAGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCATCCCTAGTTATCTGGAAATCGGATGAATCCAGAATAGGCTGCGTTCTCTACCTGATTGATGTCATTGTGAGCCTCCTTAGTGGAAGACTAGTTCGAGAAAGGATTGGCCCTGCCATGCTAAGTGCAGTGCAAAGTCAGATGGGTGCCATTGAGAGCTTTGAAGATGTCTCAAACATTTTTGACACGAGCAGTGGAAAAGGACTGCCAGGAGACTCTGTTGAAAAAATTCCAAAACTCATAATTTCTTTCACCAACAACGTGGATGCTTCCTGTTCAGTTTGCCTTCAGGATTTTCAGCTGGGAGAGACGGTAAGAAGCTTACCTCAATGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTTCTAAGACATGGCTCTTGCCCACTATGCAGAAGAGATCTTTGA | 693 | 46.46 | MSTDSFPLRLPKNRALLSAFCPKLILEQMCHFALSAVIGSILSAILTFFFALVGTLLGAMTGAVIGQETESGFVRGAAVGAISGAVFSIEVFESSLVIWKSDESRIGCVLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAIESFEDVSNIFDTSSGKGLPGDSVEKIPKLIISFTNNVDASCSVCLQDFQLGETVRSLPQCHHMFHLPCIDKWLLRHGSCPLCRRDL | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7221804 | 7223597 | - | Bma028925.1 | Bma09g00185 | 88231 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma09g00185 | 230 | Pfam | Ring finger domain | 184 | 227 | IPR001841 | - | |
Bma09g00185 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 227 | IPR001841 | - | |
Bma09g00185 | 230 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 7 | 230 | IPR044523 | - | |
Bma09g00185 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 230 | IPR013083 | - | |
Bma09g00185 | 230 | CDD | RING-H2_PA-TM-RING | 185 | 227 | - | - | |
Bma09g00185 | 230 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 7 | 230 | - | - | |
Bma09g00185 | 230 | Pfam | YMGG-like Gly-zipper | 51 | 86 | IPR027367 | - | |
Bma09g00185 | 230 | SMART | ring_2 | 185 | 226 | IPR001841 | - | |
Bma09g00185 | 230 | SUPERFAMILY | RING/U-box | 175 | 230 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma06g00083 | Bma-Chr6:1321675 | Bma09g00185 | Bma-Chr9:7221804 | 2.06E-118 | dispersed | |
Bma07g01295 | Bma-Chr7:48570884 | Bma09g00185 | Bma-Chr9:7221804 | 1.32E-22 | dispersed | |
Bma09g00185 | Bma-Chr9:7221804 | Bma14g00336 | Bma-Chr14:4188521 | 3.30E-26 | dispersed | |
Bma09g00185 | Bma-Chr9:7221804 | Bma03g00946 | Bma-Chr3:10025418 | 2.34E-121 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma09g00185 | - | - | fve:101312761 | 353.599 |