Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00198 ATGGAAGCGAATGAAAACCCACTCAGCCCCTACTACCACCTCCAGCAGCAGCAGCATCACCACCACCAGAGCCCCACCACTGCCTCAACCACCGCTACCATCTTCACGTCATCCACCAATGGCCTTCTCCCAAGTGCCCTTCATATGTCTTCTCCGGCCACTGCGACAACCACTGACACGGGGGCCCACATGCTCTATCCTCATTCTGCGCCGTCTGCGGCGGTGTCTCCGTCCCCGTTGGAGTCTGTTCGGCGGAAGAGAGGGAGACCCAGAAAGTATGGCACCCCAGAAGAGGCTTTAGCCGCGAAGAAAGCTGCGACCGCCTCCGCCCATTCTTCCACTTCGAGGGAGAAGAAGCACCGGGGTTCTTCTTTTGCTCCTTCTGCTTCTTCGTTTTCTGAATCTTCGAAGAAATCCCAACTAGGTGCTCTCGGAAACGCTGGACAAGGTTTCACACCACACGTACTCAATGTTGCAGCTGGTGAGGACGTGGGCCAAAAAATTATGTTGTTCATGCAACAAAGTAAGCGGGAAATGTGTGTTCTTTCTGCATCAGGGTCAATCTCTAATGCAGCTCTCCGACAGCCAGCCACATCAGGAGGTAATATCGCATATGAGGGTCGTTTTGAGATTATCTCACTAAGTGGATCATATGTGCGAACTGAGCTCGGAGGGAGGACCGGCGGCCTCAGTGTATGTCTGTCCAGTGCCGATGGCCAAATTGTTGGGGGAGGAGTTGGTGGGCCTTTGAAAGCCTTAGGACCCGTTCAGGTCATTGTGGGTACATTTCAAATGGACTCGAAGAAAGAAGCAATCAGCGGAGCAAAAGGCGATGCAGCTGTAAGCAAGTTGCCATCAATCGGTGGCCTATCAGGATCAAGTTTAGGCTATCGTTCAACAATCGAGCCGTCTGGTAGAAATCCCGTGAGGGGAAACGACGACGATCATCAAGTAATGGGCGGTAGCCATTTTATCCTTCAACCCCACGCCGTACACTTCTCTTCACGATCCACCGATTGGAGGAACAGTTCAGATCCTACCGGCACCGCGGGTTATGAATTGGCAGGAAGAGTCGGTCGTGGGGCAAACCAATCTCGAGAAAACGGAGACTACGATCAGATTCCGGACTAG 1131 52.87 MEANENPLSPYYHLQQQQHHHHQSPTTASTTATIFTSSTNGLLPSALHMSSPATATTTDTGAHMLYPHSAPSAAVSPSPLESVRRKRGRPRKYGTPEEALAAKKAATASAHSSTSREKKHRGSSFAPSASSFSESSKKSQLGALGNAGQGFTPHVLNVAAGEDVGQKIMLFMQQSKREMCVLSASGSISNAALRQPATSGGNIAYEGRFEIISLSGSYVRTELGGRTGGLSVCLSSADGQIVGGGVGGPLKALGPVQVIVGTFQMDSKKEAISGAKGDAAVSKLPSIGGLSGSSLGYRSTIEPSGRNPVRGNDDDHQVMGGSHFILQPHAVHFSSRSTDWRNSSDPTGTAGYELAGRVGRGANQSRENGDYDQIPD 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8043734 8049316 + Bma028946.1 Bma09g00198 88244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00198 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 28 368 - -
Bma09g00198 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 368 IPR039605 GO:0003680
Bma09g00198 376 MobiDBLite consensus disorder prediction 1 30 - -
Bma09g00198 376 MobiDBLite consensus disorder prediction 46 63 - -
Bma09g00198 376 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 264 IPR005175 -
Bma09g00198 376 CDD DUF296 152 263 IPR005175 -
Bma09g00198 376 MobiDBLite consensus disorder prediction 335 376 - -
Bma09g00198 376 MobiDBLite consensus disorder prediction 46 133 - -
Bma09g00198 376 ProSiteProfiles PPC domain profile profile. 147 285 IPR005175 -
Bma09g00198 376 MobiDBLite consensus disorder prediction 335 349 - -
Bma09g00198 376 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 263 - -
Bma09g00198 376 Gene3D - 153 277 - -
Bma09g00198 376 MobiDBLite consensus disorder prediction 295 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00198 Bma-Chr9:8043734 Bma13g00430 Bma-Chr13:7990869 0 dispersed
Bma09g00198 Bma-Chr9:8043734 Bma06g01189 Bma-Chr6:48961601 3.93E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00198 - - mnt:21407278 398.667