Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00235 ATGAGTGTATTTAATGGTGGAAAATTATTGCTTCAGAGCATTTTGCAGGTTAATATGACGGGCATTACAGGTCCATTCAGATTCACTGCAGAAAGGGACTTAATTCAACCTGCATTTGAAGTTATCAATGTCATTGGAACAGGTGTTAGGAGAGTTGGTTATTGGTCAAATTATTCGGGCTTATCTGTTTTGCCTCCGGAAAGTCTTTACTCAAATCCTCCTAATCGTTCTGCTTTAAATCAAAAGCTATACAATGTTATTTGGCCTGGACAGACGACACAGAGGCCTCGCGGGTGGGGATTTCCATACAATGGCAGACATTTGAGAATTGGAGTGCCGAAACAAGTGAGCTATCTTGAGTTTGTCAGAGAGGTGGATAGTTCAGGCACGTTTACTGGGTATTGCATTGATGTCTTCACTGCTGCAGTTAACTTGTTGCCTTATGATGTTCCCTATCAGTTAATTCCTTTTGGTGATGGTCGTACAAATCCAAGCTCTACTGAGCTTGTTCGATTGATCACCACAGGGTATTTTGATGCAGCAGTAGGTGATATTGCTATTATCACGAATCGAACAAGGATGGTTGATTTCACTCAGCCATATATCGAGTCTGGGTTAGTAGTCATTGCTCGGGTGAGGGAGTCAAGTTCTAATGCTTGGGCTTTTCTGAGGCCATTCACTCTAAGTATGTGGCTTGTTACGGCTGTCTTTTTCCTCATTGTTGGAACAGTTGTTTGGATTTTGGAACATAGGAGGAACGATCAATTCCGAGGTCCGCCCAGAAAACAACTCGTTACTGTTCTATGGTTTAGTTTTTCGACTTTGTTCTTCTCCCAAAGAGAAAACACTGTCAGCACCCTCGGTCGCATGGTGCTTCTCATATGGTTATTTGTGATTCTGATAATAAACTCAAGCTACACGGCAAGTTTGACTTCGATCCTTACAGTACAACAGCTTTCTTCTCCCATCAAAGGAATTGAAACTTTGGTAGCAAGCAATGACCGAATTGGCTACCAGCAAGGTTCATATGCTCGAAATTACCTTATTGAAGAACTCGGTATTCACGAGTCCAGGTTAATTCCTCTAATATCTGCAGCAGATTATTCGAAAGCCCTGAATGACGGGCCAGAGAATGGTGGTGTTGCTGCTATTGTTGATGAGCGTGCATATATAGAGCTCTTCCTTTCAACGCGGTGCGAATTCAGTATTGTCGGTCAAGAGTTCACCAAAAATGGATGGGGATTTGCCTTTCCACGAGACTCGCCTTTGGCGATCGACATGTCAACTGCCATTTTGAAACTAATGGAAAATGGCGATCTTCAGAAGATCCATGATAAATGGCTTACAAGAAGTGCTTGCACCTCACAAATCGCAAATCAAGAGGTGGAAAGGCTTCAGCTTAAAAGCTTTTGGGGGCTCTTTCTGTTGTGTGGATTAGCCTGTTTGCTTTCTCTGTGTGTTTATTTCTGTCTCATGGTGCGGCAGTATGGAAAGCACTACTCCGACAAACTCGAGTCTACAGGACAAGCCTCTCGTTCAAGCCGTCTTCAGACATTTCTATCGTTCGCGGATGAAAAGGAAGAAGTGGTCAAAAGCAGATCCAAAAGACGGCAAATGAAAAAGGCATCCAATTGCGGAAATACCGAAGTAAATATATCAACAAGTCTCAGCATAGGCTCAACTGGTTCAACTTCGAATGCTCCATGA 1707 42.94 MSVFNGGKLLLQSILQVNMTGITGPFRFTAERDLIQPAFEVINVIGTGVRRVGYWSNYSGLSVLPPESLYSNPPNRSALNQKLYNVIWPGQTTQRPRGWGFPYNGRHLRIGVPKQVSYLEFVREVDSSGTFTGYCIDVFTAAVNLLPYDVPYQLIPFGDGRTNPSSTELVRLITTGYFDAAVGDIAIITNRTRMVDFTQPYIESGLVVIARVRESSSNAWAFLRPFTLSMWLVTAVFFLIVGTVVWILEHRRNDQFRGPPRKQLVTVLWFSFSTLFFSQRENTVSTLGRMVLLIWLFVILIINSSYTASLTSILTVQQLSSPIKGIETLVASNDRIGYQQGSYARNYLIEELGIHESRLIPLISAADYSKALNDGPENGGVAAIVDERAYIELFLSTRCEFSIVGQEFTKNGWGFAFPRDSPLAIDMSTAILKLMENGDLQKIHDKWLTRSACTSQIANQEVERLQLKSFWGLFLLCGLACLLSLCVYFCLMVRQYGKHYSDKLESTGQASRSSRLQTFLSFADEKEEVVKSRSKRRQMKKASNCGNTEVNISTSLSIGSTGSTSNAP 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10098898 10101438 + Bma029012.1 Bma09g00235 88281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00235 568 Gene3D - 37 61 - -
Bma09g00235 568 SMART GluR_14 107 450 IPR001320 GO:0015276|GO:0016020
Bma09g00235 568 Gene3D - 378 455 - -
Bma09g00235 568 Gene3D - 100 218 - -
Bma09g00235 568 SUPERFAMILY Periplasmic binding protein-like I 6 99 IPR028082 -
Bma09g00235 568 Gene3D - 3 36 - -
Bma09g00235 568 PANTHER GLUTAMATE RECEPTOR 3.6 2 550 - -
Bma09g00235 568 Pfam Bacterial extracellular solute-binding proteins, family 3 125 449 IPR001638 -
Bma09g00235 568 Gene3D - 219 348 - -
Bma09g00235 568 Pfam Ligand-gated ion channel 450 481 IPR001320 GO:0015276|GO:0016020
Bma09g00235 568 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 550 - -
Bma09g00235 568 CDD GluR_Plant 108 448 - -
Bma09g00235 568 SUPERFAMILY Periplasmic binding protein-like II 85 450 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00235 Bma-Chr9:10098898 Bma12g00800 Bma-Chr12:37363190 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00235 K05387 - qsu:112001927 850.121