Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00237 ATGGCTTCTGCTTCTGCATACACCATCTTCATGCTCATATTTGTGTACTCTGTTACAGGAGAAGCTCGAGAAATAACTCTAGGCCAGTCGCTGTCCACCCTGGAAAACCTTTCATGGTCCTCTTCTTCTGGGAACTTCGCATTTGGGTTCTACAAGCAAGACGATGGATTCTTGATCGGAACTTGGTTGGTTGGAAAAGAAAAGACAATAATGGTGTGGACAGCAAATCGAGATAATCCATTAATCACCTCCAAAGCCATTCTTAGTTTAAACAGTACGGGCGTTGTTTTGGAAACGTCAAGTGGAGAGCAGACAGGGGTTGCACTTGTAACTGAACCAGCTGCTTTTGCCACCATGCTCAACAATGGAAACTTTGTCCTCCTTAATCTAAATAAATCTATTGTATGGCAGAGTTTTGGTCATCCAACTGATACCCTTTTAGGGGGCCAGATTCTTGTCGCCGGAAGTAATTTGTACTCCAGCCGTTCGGAGACCAACCACTCGTGTGGACTATTTCATCTCGAGATGCAAACCGACGGGAATCTCGTCCTGTACCCTTCCCACACTTCAAACTTCCCAGTAGACAGCTACTGGAGTTCAGATACTTTCGGCGGCAATACAACTTATCTCAATATGGACCCATCGTCTTTGTTAGGTCTTGTTATTAGAGATTCCTCTAAATTGATTGCAGAATTGTACTACAACAAATCTGGGAACACTTCTGATTACGTCTCCACTGGATTTCCGATTTACAGAGCTACTCTCGATGTTGATGGGGTTTTCCGTTTGTACTCACATTCTCTGGATGGAAATGGTGAGCTGACGACTGAAATTCTATGGCAGGTTGTGGAGAATGTTTGTGCGATTAAGAGCTACTGTGGGTTCAATAGCTATTGCACATTCGAGGACTACAGACACTACTGTCGCTGTCTTCCCGGAACAGACAGCATTGACGCTGATCAGAGGTCTGGCTGCAAGAAGAACTCCTCCGAAGAACGTTGCATCGGTGGGAAAGAAAATGATAGGATTTATAACATTACTGTGCTTGATCACATGACATGGGGCGATCGTCCTTATTTCCAGGGGAAAATGACGATCGAAGAATGTAAGGTTTCGTGCATGGAGGACTGTAATTGCGGGGCGGCGCTGTTCGATGACAACAAGTGCATGAAACAGAGCCTCCCTCTGAGATATATCATTAGGAAAAACCAAGTAACTTCAAAAGCTCTTCTGAAGGTGGTTGACAAACGCGTTCGAAATTCCAATTCATCTGATCAGATTAAGTCGGAAATTTTCGTTATGACTACAAGTTTCATCCTTCTGTCCGGCCTATTTCTCACAATTGCTGGCATTTTCATACATAAATATCGAGTTCTTAAGTACCAGAGATTGCTGGAGAGTGGAAATTCTGGGTTTGTGCAGGATCTCGAGTTGAGATTGTTCTCATACAATGATCTCCGAAAAGCGACAAACGGGTTCAAGCAAGAGTTGGGCAGAGGCTCATTTGGAGCAGTATATAAAGGGTCATTCCACAAGGGCAAGAAGCTTGTTGCAGTGAAAAGACTAGAGAAGGTGGTTGAAGATGGGGAGAGGGAGTTTCAGGCTGAGATGAGAACCATTGGGAGAGCCCATCATAAGAACTTAGTAAGCTTACTTGGCTATTGTATCGAAGACTCCAAAAGGCTTCTCGTCTACGAATACATGACAAATGGCTCCCTTGCCAATCTTCTCTTCAGATCGCAAACTCGTCCCAGTTGGACCGATCGAGTGCGAATTGTAGAAGAGGTTGCAAAGGGTTTACTATATCTCCATGAAGAGTGTGAGACCCCAATCATCCATTGTGATATAAAACCCCAAAACATTTTGATGGATGATTTTGGGACTGCTAAAATATCAGACTTCGGGGTAGCAAAACTTTTAATGCCTGACCAAACAAGGACTTTTACGAGCCCCAGAGGAACCAGAGGCTATTCTGCCCCGGAATGGGAGAAGAGCGTCCCCATATCTCTCAAAGTAGATGTTTATAGCTATGGTATTGTCCTCCTTGAAACTGTCTGCTGCCGGCGGATATTCGAGGTGAACGTGCAGGACCCAGAAAAAATTGTTCTCTACTCGTGGGTTTACAAGTGCTTTGTTAAGGGACAATTGAACAAAATTGTGAATGGTGAGGAAGTTGAGAAGAACGTTTTGGATAAATTGGTTAAAGTTGCATTGTGGTGTGTTCAAGACGAGCCTGCTCTTCGTCCTTCGATGAAGAGTGTCGTTTTAATGCTTCAAGGCGTCACCGACATAGCCGTTCCTCCATGTCCGACCACCCCGTAA 2322 44.44 MASASAYTIFMLIFVYSVTGEAREITLGQSLSTLENLSWSSSSGNFAFGFYKQDDGFLIGTWLVGKEKTIMVWTANRDNPLITSKAILSLNSTGVVLETSSGEQTGVALVTEPAAFATMLNNGNFVLLNLNKSIVWQSFGHPTDTLLGGQILVAGSNLYSSRSETNHSCGLFHLEMQTDGNLVLYPSHTSNFPVDSYWSSDTFGGNTTYLNMDPSSLLGLVIRDSSKLIAELYYNKSGNTSDYVSTGFPIYRATLDVDGVFRLYSHSLDGNGELTTEILWQVVENVCAIKSYCGFNSYCTFEDYRHYCRCLPGTDSIDADQRSGCKKNSSEERCIGGKENDRIYNITVLDHMTWGDRPYFQGKMTIEECKVSCMEDCNCGAALFDDNKCMKQSLPLRYIIRKNQVTSKALLKVVDKRVRNSNSSDQIKSEIFVMTTSFILLSGLFLTIAGIFIHKYRVLKYQRLLESGNSGFVQDLELRLFSYNDLRKATNGFKQELGRGSFGAVYKGSFHKGKKLVAVKRLEKVVEDGEREFQAEMRTIGRAHHKNLVSLLGYCIEDSKRLLVYEYMTNGSLANLLFRSQTRPSWTDRVRIVEEVAKGLLYLHEECETPIIHCDIKPQNILMDDFGTAKISDFGVAKLLMPDQTRTFTSPRGTRGYSAPEWEKSVPISLKVDVYSYGIVLLETVCCRRIFEVNVQDPEKIVLYSWVYKCFVKGQLNKIVNGEEVEKNVLDKLVKVALWCVQDEPALRPSMKSVVLMLQGVTDIAVPPCPTTP 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10202898 10205219 - Bma029015.1 Bma09g00237 88283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00237 773 Gene3D Transferase(Phosphotransferase) domain 1 568 766 - -
Bma09g00237 773 ProSiteProfiles Protein kinase domain profile. 491 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00237 773 Gene3D - 142 285 - -
Bma09g00237 773 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 772 IPR045874 GO:0004672
Bma09g00237 773 Pfam D-mannose binding lectin 71 151 IPR001480 -
Bma09g00237 773 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE LECRK1 18 772 - -
Bma09g00237 773 SMART blect_4 22 142 IPR001480 -
Bma09g00237 773 PIRSF SRK 1 772 IPR024171 GO:0004674
Bma09g00237 773 ProSitePatterns Protein kinases ATP-binding region signature. 497 520 IPR017441 GO:0005524
Bma09g00237 773 SUPERFAMILY Protein kinase-like (PK-like) 474 758 IPR011009 -
Bma09g00237 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Bma09g00237 773 ProSiteProfiles Bulb-type lectin domain profile. 22 140 IPR001480 -
Bma09g00237 773 Pfam Protein kinase domain 494 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00237 773 Gene3D Phosphorylase Kinase; domain 1 459 567 - -
Bma09g00237 773 SMART serkin_6 491 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00237 773 Gene3D - 17 141 IPR036426 -
Bma09g00237 773 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 203 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00237 - - - mesc:122721379 861.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01027 Bma-Chr3:11455959 Bma09g00237 Bma-Chr9:10202898 8.97E-176 dispersed
Bma06g00504 Bma-Chr6:25048578 Bma09g00237 Bma-Chr9:10202898 0 dispersed
Bma06g01234 Bma-Chr6:49454982 Bma09g00237 Bma-Chr9:10202898 1.90E-83 dispersed
Bma09g00237 Bma-Chr9:10202898 Bma15g00414 Bma-Chr15:4485104 6.84E-78 dispersed
Bma07g00250 Bma-Chr7:3030116 Bma09g00237 Bma-Chr9:10202898 7.22E-177 transposed
Bma08g00603 Bma-Chr8:38037157 Bma09g00237 Bma-Chr9:10202898 4.03E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1259 . Blo16g00527 . . . . Bma09g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015899 2 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66691 PF00069 Pkinase 4.90E-51 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00237 Bma_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0