Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00258 ATGGCTGTGGAGCTCATGATGAGTTATAGCCCTAACTCCGATTTCTCTGCAAAAATGGAGGATTCTGCCGTTCAAGAAGCAGCTTCTGGCCTTGAGAGCGTCGAAAAGCTCATTAGGTTACTCTCCCGTGCGCAGCAGAACCAGAGGCCGGAGAATCACTCTCACTCGCCCAGTTCCAGCTCCAGGATGCCTATGGAGGTCGAGATGGACTGTAAGGCCGTGGCCGATGTCGCCGTTTCTAAGTTTAAGAAAGTTATTTCTCTTTTGGGTCGAACCAGAGTCGGTCATGCCCGCTTCCGAAGAGCTCCATTTGAGCTTTCCAGTGCTGAAGTTCACTGCGCAACTCCGATTCAGCAAATCCCTCCGGTCCCTAACCGTCAAACCAACTCCGTTGTAGTCGCTGCTTCTAAAGGCGCCGAGATTGAGAGAAAGGACTCGTTTTCCACTGTTAATTTTTCTTATTCCTCGGCTCCTAACTCCTTTATGTCGTCGTTGACCGGAGACACTGACGGCAAACAGCCGTCGCCGCCTTCTGCGTTTCAGATTACGAATCTCTCTCAGGTCTCCTCCACCGGAAAACCACCTCTCTCTTCCTCTTCCTTCAAGAGGAAGTGTAGTTCCAACAACCTCAGCTCCGGGTCCGCTAAGTGCGCGGGCTCCTCTGGCCGCTGCCACTGTTCGAAGAAAAGAAAACTGAGATTAAAGAGGGTCGTGAGGGTTAGGGCGATCAGCTTGAAGATGGCTGATATTCCGCCGGACGATTACTCTTGGAGAAAATACGGACAGAAACCCATCAAAGGATCTCCACATCCAAGGGGGTACTACAAGTGCAGCAGCGTGAGAGGTTGTCCGGCCAGAAAACACGTAGAGAGAGCTTTGGATGATCCGGCAATGTTGGTCGTCGCTTACGAAGGAGAACACAACCATCCTCTCTCTGTTGCAGAGCCCTCCACTCTCATTCTCGAGTCCTCATAG 975 51.69 MAVELMMSYSPNSDFSAKMEDSAVQEAASGLESVEKLIRLLSRAQQNQRPENHSHSPSSSSRMPMEVEMDCKAVADVAVSKFKKVISLLGRTRVGHARFRRAPFELSSAEVHCATPIQQIPPVPNRQTNSVVVAASKGAEIERKDSFSTVNFSYSSAPNSFMSSLTGDTDGKQPSPPSAFQITNLSQVSSTGKPPLSSSSFKRKCSSNNLSSGSAKCAGSSGRCHCSKKRKLRLKRVVRVRAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVAYEGEHNHPLSVAEPSTLILESS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13682400 13683572 - Bma029062.1 Bma09g00258 88304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00258 324 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 324 IPR044810 GO:0003700
Bma09g00258 324 Pfam WRKY DNA -binding domain 253 310 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma09g00258 324 ProSiteProfiles WRKY domain profile. 246 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma09g00258 324 MobiDBLite consensus disorder prediction 43 63 - -
Bma09g00258 324 Gene3D WRKY domain 236 312 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma09g00258 324 MobiDBLite consensus disorder prediction 43 64 - -
Bma09g00258 324 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 14 324 - -
Bma09g00258 324 SMART WRKY_cls 251 311 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma09g00258 324 Pfam Plant zinc cluster domain 202 249 IPR018872 -
Bma09g00258 324 SUPERFAMILY WRKY DNA-binding domain 248 311 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00400 Bma-Chr1:3338515 Bma09g00258 Bma-Chr9:13682400 1.10E-69 dispersed
Bma04g00033 Bma-Chr4:369663 Bma09g00258 Bma-Chr9:13682400 6.28E-73 dispersed
Bma04g00155 Bma-Chr4:1345202 Bma09g00258 Bma-Chr9:13682400 1.26E-107 dispersed
Bma09g00258 Bma-Chr9:13682400 Bma09g00608 Bma-Chr9:43273074 8.56E-60 dispersed
Bma09g00258 Bma-Chr9:13682400 Bma01g02264 Bma-Chr1:79806697 1.41E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57831 PF03106 WRKY 1.50E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00258 - - tcc:18611185 446.047