Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00260 ATGGCACAAAGGTCAGCTCCTGCTCCGTTTCTGACGAAAACGTATCAGTTGGTGGAAGATGAGAGCAGCGACGAAGTGATTTCATGGAGCGAGAGTGGCACTACCTTTGTCGTTTGGAAAACGGCCGATTTCGCAAACGATTTGCTTCCCAAATTCTTTAAACACAATAATTTCTCAAGCTTTGTTCGTCAGCTCAACACTTACGGGTTTCGAAAAACTGTTCCCGATAAATGGGAATTCGCGAACGACAACTTCAAGCAAGGGCAGAAGGAGCTCCTCATCAAGATCCGTCGCCGGAAGACAGCAACTTCGACAGCTACGCAGGGAAAAACTGCTGGGAAATCAGCAGGAGTTGATCAAATGTCGCCGTCGGACTCAGGCGAGGACGGCGGGTCGACGTCGACTTCGTCACCGGATTCGAAGAACCCGGGGTCGGTAGAGACGGTGCAAGTAACTCAGGTGGCAGAGTTGTCTGAGGAGAACCAGAAACTGAAGAAGGACAACCAGATTCTGAACTGTGAACTGGCTGAGACGAAGAAGCAGTGCGATGATCTGGTGGGTTTTCTGACGAAGTACTTGAAGGTGGGCCCGGATCAGATCGATCTAATCATGCGTCAAGGAAGCCATGCGTCAACCCAAGATGGATCAACCGGGGCCATTGGTGCCGAGGGCGACAAAGGAGGCAAAGCTATGGCGGAAGAGGAGGGAGAGAGTCTGAAGCTTTTCGGGGTTTGGTTGGTGGAGAAGAAGACAAAGAGGCTCCGTGATGACAAACAAGAATTAAAGCAGGCCCACCCCAAGTCTCTGAAATCCGTCGAATTGCGCGCGCCTTTGGGCAGGGGTAGCAACATCTGCACCTGA 861 51.57 MAQRSAPAPFLTKTYQLVEDESSDEVISWSESGTTFVVWKTADFANDLLPKFFKHNNFSSFVRQLNTYGFRKTVPDKWEFANDNFKQGQKELLIKIRRRKTATSTATQGKTAGKSAGVDQMSPSDSGEDGGSTSTSSPDSKNPGSVETVQVTQVAELSEENQKLKKDNQILNCELAETKKQCDDLVGFLTKYLKVGPDQIDLIMRQGSHASTQDGSTGAIGAEGDKGGKAMAEEEGESLKLFGVWLVEKKTKRLRDDKQELKQAHPKSLKSVELRAPLGRGSNICT 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13812729 13814255 + Bma029064.1 Bma09g00260 88306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00260 286 MobiDBLite consensus disorder prediction 103 149 - -
Bma09g00260 286 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma09g00260 286 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma09g00260 286 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma09g00260 286 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 276 - -
Bma09g00260 286 MobiDBLite consensus disorder prediction 208 227 - -
Bma09g00260 286 SUPERFAMILY Winged helix DNA-binding domain 6 99 IPR036390 -
Bma09g00260 286 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 276 IPR027725 -
Bma09g00260 286 Coils Coil 154 181 - -
Bma09g00260 286 Gene3D - 2 101 IPR036388 -
Bma09g00260 286 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bma09g00260 286 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00260 K09419 HSFF; heat shock transcription factor, other eukaryote - twl:119999524 343.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02269 Bma-Chr1:79851147 Bma09g00260 Bma-Chr9:13812729 6.19E-60 dispersed
Bma04g00159 Bma-Chr4:1377238 Bma09g00260 Bma-Chr9:13812729 1.31E-18 dispersed
Bma09g00260 Bma-Chr9:13812729 Bma01g00922 Bma-Chr1:8984682 4.50E-41 dispersed
Bma09g00260 Bma-Chr9:13812729 Bma05g00705 Bma-Chr5:41049002 2.92E-43 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
Bma05g00705 . 12 278 HSF AT4G17750 68.6 1.4e-95 347.1
Bma01g00922 . 27 245 HSF AT4G17750 54.3 1.7e-59 227.3
Bma02g00528 . 39 225 HSF AT4G17750 55.2 4.2e-55 212.6
Bma02g01198 . 9 207 HSF AT4G17750 52.3 8.8e-53 204.9
Bma05g01091 . 36 220 HSF AT4G17750 53.0 2.0e-49 193.7
Bma06g00874 BCT 171 358 HSF AT4G17750 50.5 6.6e-48 188.7
Bma01g02269 . 20 118 HSF AT4G17750 71.7 3.6e-38 156.4
Bma05g00705 . 16 296 HSF AT5G16820 70.2 6.3e-96 348.2
Bma12g00234 . 22 325 HSF AT5G16820 64.4 4.2e-92 335.5
Bma01g00922 . 40 245 HSF AT5G16820 52.6 2.0e-54 210.3
Bma02g01198 . 11 206 HSF AT5G16820 53.1 1.7e-53 207.2
Bma02g00528 . 40 225 HSF AT5G16820 52.9 5.6e-52 202.2
Bma05g01091 . 37 222 HSF AT5G16820 53.6 5.8e-49 192.2
Bma12g00234 . 24 507 HSF AT1G32330 52.2 3.7e-112 402.1
Bma05g00705 . 18 300 HSF AT1G32330 69.7 9.7e-105 377.5
Bma01g00922 . 28 233 HSF AT1G32330 54.0 5.8e-57 218.8
Bma02g01198 . 6 186 HSF AT1G32330 51.8 6.4e-48 188.7
Bma01g02269 . 18 117 HSF AT1G32330 70.0 1.7e-37 154.1
Bma05g00705 . 28 295 HSF AT3G02990 69.5 8.3e-93 337.8
Bma01g00922 . 40 226 HSF AT3G02990 56.0 4.0e-55 212.6
Bma02g01198 . 11 209 HSF AT3G02990 52.6 1.3e-53 207.6
Bma02g00528 . 40 226 HSF AT3G02990 52.4 1.4e-52 204.1
Bma05g01091 . 37 235 HSF AT3G02990 50.2 5.6e-49 192.2
Bma01g02269 . 8 133 HSF AT3G02990 58.9 1.3e-37 154.5
Bma02g00528 . 28 245 HSF AT2G26150 59.8 5.7e-75 278.1
Bma05g00705 . 6 248 HSF AT2G26150 51.8 1.6e-61 233.4
Bma01g01469 BCT 7 392 HSF AT4G18880 50.1 8.4e-94 340.9
Bma02g01198 . 3 480 HSF AT4G13980 53.1 3.3e-126 448.7
Bma01g00922 . 28 222 HSF AT5G43840 50.8 2.2e-48 189.5
Bma01g00922 . 28 254 HSF AT3G22830 56.5 2.1e-68 256.5
Bma05g00705 . 16 237 HSF AT3G22830 58.8 6.3e-65 245.0
Bma02g00528 . 28 232 HSF AT3G22830 54.7 2.5e-61 233.0
Bma12g00234 . 28 236 HSF AT3G22830 54.6 2.8e-57 219.5
Bma06g00874 BCT 160 380 HSF AT3G51910 51.6 2.9e-53 205.7
Bma05g00705 . 22 223 HSF AT3G51910 54.5 1.1e-52 203.8
Bma02g00528 . 28 219 HSF AT3G51910 53.6 1.1e-49 193.7
Bma01g00922 . 28 233 HSF AT3G63350 50.5 1.2e-51 200.3
Bma06g00874 BCT 160 354 HSF AT3G63350 50.8 1.3e-48 190.3
Bma06g00874 BCT 166 372 HSF AT5G54070 52.4 1.5e-51 200.3
Bma01g00243 BCT 158 364 HSF AT5G54070 51.4 3.6e-50 195.7
Bma09g00260 . 2 285 HSF AT4G36990 51.4 1.5e-68 256.5
Bma01g02269 . 16 119 HSF AT4G11660 75.0 6.8e-45 178.3
Bma09g00260 . 2 100 HSF AT4G11660 74.7 5.9e-41 165.2
Bma01g02269 . 1 343 HSF AT1G46264 55.2 6.1e-93 337.8
Bma05g00705 . 27 132 HSF AT1G46264 68.9 2.3e-39 159.8
Bma02g01198 . 1 102 HSF AT1G46264 68.6 1.9e-38 156.8
Bma05g01091 . 36 131 HSF AT1G46264 70.8 8.2e-37 151.4
Bma06g00796 . 6 179 HSF AT3G24520 63.2 8.0e-58 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007234 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57832 PF00447 HSF_DNA-bind 2.80E-31 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00260 Bma_Chr09 FPKM 1.188889 0.991614 2.210488 1.735787 3.290931 3.17582 3.196877 3.283091 2.950988 3.931684