Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00267 ATGGAGGGTAGAGATGAAGAGAGAGAAGCTCTGAGAAAAAGAGAAATGGAGAACGAAAGAGTGTACAGAGGGATAAGGATGAGGAAATGGGGTAAGTGGGTGGCTGAGATACGAGAACCCAATAAGCGCTCAAGGATTTGGCTTGGTTCTTACTCTTCTCCGGTCGCCGCCGCTCGGGCTTACGACACCGCCGTCTTCCATCTCCGCGGTCCCTCTGCTCGCCTGAACTATCCTGAGTTTTTATCTCATACACCTGGAGTTCTTTCCCCCGGCGATATCTCTGCAGCATACATACGGAAGATAGCGACGGAGGTCGGCACGCGAGTCGACGCCCTTGAAAGCTCCCTCTGTCGCCATACCAAGCGTCCGACAACGGCGAAGATCGAGCACAACTCCAGAAACGGGTACTTACAAGTTGACTTGAACAAACTACCAGACCCGGAAGATTTGGAGTATGAGTGA 462 52.16 MEGRDEEREALRKREMENERVYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFHLRGPSARLNYPEFLSHTPGVLSPGDISAAYIRKIATEVGTRVDALESSLCRHTKRPTTAKIEHNSRNGYLQVDLNKLPDPEDLEYE 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14634594 14635055 + Bma029075.1 Bma09g00267 88313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00267 153 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Bma09g00267 153 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Bma09g00267 153 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Bma09g00267 153 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Bma09g00267 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 1 149 - -
Bma09g00267 153 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Bma09g00267 153 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Bma09g00267 153 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Bma09g00267 153 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Bma09g00267 153 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 1 149 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01111 Bma09g00267 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00321 Bma-Chr2:3940425 Bma09g00267 Bma-Chr9:14634594 3.40E-26 dispersed
Bma03g01111 Bma-Chr3:14395237 Bma09g00267 Bma-Chr9:14634594 2.99E-58 dispersed
Bma04g00157 Bma-Chr4:1351665 Bma09g00267 Bma-Chr9:14634594 2.05E-49 dispersed
Bma06g00651 Bma-Chr6:34931400 Bma09g00267 Bma-Chr9:14634594 9.29E-26 dispersed
Bma09g00267 Bma-Chr9:14634594 Bma05g00749 Bma-Chr5:43958112 4.03E-28 dispersed
Bma09g00267 Bma-Chr9:14634594 Bma01g00656 Bma-Chr1:5967683 1.48E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57833 PF00847 AP2 5.60E-11 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00267 K09286 - qsu:111995794 184.111