Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00268 ATGAGCAATTTAAGCAAGGAAGAATTCGTCCATGTTCTACGCCGACAAAGCACTGGATTTCCTAGAGGGAGCTCCAAGTATAGGGGCGTAACATTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGACAATTTCTAGGAAGAAAATACATCTACTTGGGTTTGTTTGATACAGAGATTGAAGCTGCGAGGGCATATGACAAAGCTGCCATTAAATTCAATGGCAAAGAGTCTGTTACTAATTTTGATGCAAGCATCTATGAAAATGAGCTCAACCCAACAGATGCTTCAGCTAATAATGGCGGTGATCACAATCTTGATTTAAGTTTAGGCAATTCGAGCTCAAAGCAAATTAATCCAGCATGTTTTAATGAGGATAGACATCGTCCATCTGGGTCAATACCATTTGAGAGAGAGTGGCGAACTCAAGTGATCAATCCTCAGGAATCAAAGGGAATAAGCAGATATCTTGAGACAGAAACCATGCAGCTTCTAAGCCAAACTCATCTTCATTCCCCAGCCTCTGATGGAAGGCAAAGATATGGGCAATCCCGGCCAGTGGGGTACCCTATTCTTCATAACTACTACTCTCCTCACCTTCCATCATCAAATTATCAAATTCAGTTTTCAAGCAGCAGCAGCAACGGATCAGATCGCATAGGAAGTGAACTTTCTCTCTCTTCCAAGCCTCATAATTTTCAATCTGATCCTACTTCTCAAATGTTGGCAACTGCTGCAGCATCATCAGGATTCCAACTGCAGACTCGACCCTCCCAAAATTGGCCCCACAAAAATGGGTTTCACTTTCTTACGTGA 816 42.89 MSNLSKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGRKYIYLGLFDTEIEAARAYDKAAIKFNGKESVTNFDASIYENELNPTDASANNGGDHNLDLSLGNSSSKQINPACFNEDRHRPSGSIPFEREWRTQVINPQESKGISRYLETETMQLLSQTHLHSPASDGRQRYGQSRPVGYPILHNYYSPHLPSSNYQIQFSSSSSNGSDRIGSELSLSSKPHNFQSDPTSQMLATAAASSGFQLQTRPSQNWPHKNGFHFLT 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 14727677 14728963 - Bma029076.1 Bma09g00268 88314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00268 271 MobiDBLite consensus disorder prediction 207 265 - -
Bma09g00268 271 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Bma09g00268 271 MobiDBLite consensus disorder prediction 207 271 - -
Bma09g00268 271 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Bma09g00268 271 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 2-LIKE ISOFORM X1 1 268 - -
Bma09g00268 271 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Bma09g00268 271 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Bma09g00268 271 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Bma09g00268 271 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Bma09g00268 271 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Bma09g00268 271 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Bma09g00268 271 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 268 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01107 Bma09g00268 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00380 Bma-Chr6:10500226 Bma09g00268 Bma-Chr9:14727677 7.03E-13 dispersed
Bma09g00268 Bma-Chr9:14727677 Bma13g01218 Bma-Chr13:45455279 2.15E-26 dispersed
Bma09g00268 Bma-Chr9:14727677 Bma07g00126 Bma-Chr7:1983908 2.14E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57834 PF00847 AP2 1.20E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00268 K09284 - rcu:8260999 305.834