Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00337 ATGGCAGAAGTTAGAGTGGAAAACTTGCTAATAAATGTGGAAGGGCTACAAAAAATTGAAAAAAAAGGTCCAATGGAAGATACAAGTGATGATTTGCCTGTTTCAGAAGAACATTGGAGTGATGATACGTATTCTGATTACGAGGGCCAAAAACTATCTTGTGGTTCCTTGGAAATGGAGTGTGACGATGTAAATGCCCTGAATTTTTGTACTGAATCCCGTTTAGCACCTGAGACCTCTCATCTAATGGTGAATTCTATAGAAAGTGAATTGACACTTAACAATAGGGAAGGAGAACCATCTGTTTCAGAGCCTTCGTGGCTAGAAGGGGACGAATCTTTGGCTTTGTGGGTAAAGTGGAGAGGGAAATGGCAGGCAGGAGTCAGATGTGCGAGAGCAGACTGGCCGTTAGCAACTTTGAGAGCAAAACCAACTCATGATCGAAAAAATTACTTTGTCATTTTTTTTCCTCATACAAGGAACTATTCTTGGGCAGATACTCTACTTGTTCGGTCTATTAACGAATCCCCAGAGCCCATCATACACAAGACTCATAGAGCTGGTTTGAAAATGGTTAGGGATTTAAACATTGCACGACGTTTTATAATGAAAAAATTAGCTGTTGCCATACTGAACTTTATCGACCAACTTCATTCAGAGGCTTTGATAGAAAGTGCTCGAGATGTGATGAGTTGGAAGGACTTTGCCATGGAAGTATCACGCTGTAATGGTTATTGCGATCTTGGTAGAATGCTTCTAAAACTGCAGAGCATGATTCTACCCCGCTTGATTAATTCTGAGTGGTCTAAACATTCATTACTATCTTGGGTACAACGATGCCAAGATGCTCAAGCTGCTGAAACTGTTGAAATGCTGAAAGAGGAGTTAGACGATTCAATTTTGTGGACTGAAATCAATGCTCATCGAGATGAATCAATGCATCCCACATTCTGTTCTGAATGGAAAACCTGGAAGCATGAAGTCATCAAGTGGTTTTCATTATCCGGTTCCTTATCTAGCTGTGAAACTATGCAGCGGCAGACCAATGATACTCCATTATCCACAAGTCAGCAACTTGGCAGGAAAAGGCCTAAGCTTGAAATTCGCCGTGCAGAACCACATTCTTCGCAGGTGGAATCCAAAAATTCAGAACCATCTACCAGTCTTCAAATTGATTCTGGGTTTTTTAGCAGCCTGGGCGGTGCAAATGTAGCAGTGTTAGCACCAGAGTCATGCAAAGAAGAGGCTTCAAGAGATGTTACCTCAACAGAGTCGCCCAGCACCGTGGCTAATAAATGGGATGAGATTTTTGTTGAAACTGGCAATTCGAAGTCAATCCTGCCCATAGAAGCTGAATTGACACCTATTAAAGCTATAATTGGGGCAAGACCCTTAGATACAGGGAATAGAAACAGACAGTGTATAGCATTTATCGAATCGAAGGGAAGGCAATGTGTTAGGTGGGCCAATGAGGGAGATGTTTACTGCTGTGTGCATCTGTCGACACGTTTTTCTAGTAACTCTGCCAAAAAACAGAATATTATCTCTGCCGATGCACCAATGTGCCAAGGTACCACAGTTCTTGGTACTAAATGCAAACATCGCTCACTGTATGGATCCTCATTCTGTAAAAAGCATGGGCCAATGAGTGAAATGAAATCAAACTATAGTTTCACTGAGAATAGGCTTAAGAGAAAGAATATGGACATGATTTCTAACTTAGAATCAACAGATGGAAAAGATCTAGTTCTTGTTGGTGATGTTGAAAGTCCTCTGCAAGTAGATCCTCTCTCGGTTGGTTTTGCTGATAACCTTGAACAACATCCTAGTAATGGCAACATTGCCACAGTGGCCTTGCAATGTATTGGCTCCTGCCGGCAAAATGACAACAGCCCATGTCTGGAAAGTCCAAAACGGCATTCACTATACTGTGAAAAACATCTACCAAGCTGGCTTAAGCGTGCAAGGAATGGTAAGAGTAGAATAGTATCAAAAGAAGTGTTCATGGAGCTTTTGGGAGATTGTCGCACTCAGGAGGTAAAGATTCATCTGCATCAAGCGTGTGAGCTATTTTATAAGCTCTTTAAAAGTATTTTATCCCTAAGAAACCCAGTTCCTAAGGAAGTTCAGTTTCAATGGGCTCTATCTGAAGCCTCAAAAAACTCAGGAGTCAAAGAACTTTTCATAAAATTAGTTCTCCTTGAAAAAAAGAGATTGAAAGAGATATGGGGATTCGGTGGTGAAGAACATGGTCAACTGTTGCTGTCTTCGAAGGAAGAACCAGCTCAAATACCATTGATAACTCTCGGTTGTAATGATGATGAAACCTCAATTAGGTGCAAAATTTGCTCTGAAGTGTTTCCAGATGACCAAGCACTCAGCACCCACTTCATGGATGGTCATAAAAAAGAAGCACAATGGCTGTTTAGAGGTTATGCTTGTGCCATCTGCCTAGATTCTTTTACGAACAAAAAAGTCCTTGAATCTCATGTTCAGGATAGGCATCATGTGTCGTTCGTTGAGCAGTGCATGCTAATCCAGTGTATTCCTTGTGGCAGCCATTTTGGAAACACTGAGCAATTATGGTTGCATGTACTTGCTGTTCATCCTAGCGACTTCAGGTTGTCAAAATTACAGAAGAATTACGGGTCTGCCGGTGAGGATTCTCCTCAGAAACAAGAGCTTAATTCAGTTTCTTTAGAGAAATCCTCAGAGAATATACATGGTGAGAGGAAGTTTATTTGCAGGTTATGTGGGTTAAAGTTTGATTTATTGCCTGATCTTGGTCGTCACCATCAAGCAGCACATATGGGCGCGAGTCTAGTCAGCACTTGCCCCTCAAAGAGAGGGATACATTATTACGCTTATAAAATGAAATCTGGGAGACTTAGCCGTCCAAGATTTAAAAAGAGTCTCACAGCCGCCTCATATCGGATCAGAAACAAGGCCAATGCCACTATTAAGAAACGCATGCAAGCATCAAAGTTGCTTCAAAATGGAGATGTCAATGAACAAAAACATGTACCACAGTTAGCAAGCATTGGAAGATTAATCGAACCCCAATGCTCTTCTGTTGCGAAGATATTGTTCTCTGAGATTCAGAAAACGAAACCCCACCCTACCAGCTTTGATATTTTGGAAACTGCTCGCTCTGCTTGCTGCAAAATCACCCTCAAAGCGTTGCTGGAGAATCAATATGGATTAATGCCAGAAAACTTATATCTAAAGGCTGCGAAACTCTGCAGTGAGAATAATGTCCAAGTTGATTGGCATCTTGAGGGCTTCAGCTGTCCGAAAGGATGTAAACTGTTTAAGGAATGTTACCTCTCTCCATTGACACCTAGTCCTAATGGTTTTATTCATCATGGATCTAGAAATTCACCAGCTCCTGCAGATGTCGAATTGGAAGCCGATGAGTGTCATTATGTTATTGATTCCCACCTTTTAAGACATAGTTCCATGCAGAAAGGTACCATCTTGTGTGATGATATAAGCTTTGGGCTGGAATCTGTGCCTGTTGTTTGTGTGGCTGACGAAGGTGTCCTGGATTCTCTTCAAATTTCTAAGGGTGGTTCTGAGCACCAAAATCCTAATCCTTCCCCATGGGAGGGTTTTACGTATGTTACGAAGCCAATACTTGATAAATCTCTTGTTCTTGATACAGAGAGTTTCCAACTGGGATGTGGCTGCCCAGATTCAGCATGTCGTCCTGAACTGTGCGATCATGTTTACCTTTTTGATAATGATTTTGATGATGCAAGAGACATTTATGGGAAACGCATGTGTGGGCGATTGCCGTATAACGATAAAGGTCGTGTTATCCTTGAGGAGGGTTACCTTGTATATGAGTGCAATCAAAAGTGCAGTTGTGGCAGAACCTGTCCAAACAGGGTTTTGCAGAATGGCGTTCGAGCGAAACTAGAAGTGTTCTTGACTGAGAAGAAGGGATGGGCAGTCAGGGCAGGTGAAACAATTCTACGTGGCACGTTTGTGTGTGAATATATCGGGGAGATTTTGAACGATGACGAAGCAAAAAAGAGATATAAAAGGCATGTTAGGGAAGGATGCCACTATTTCCTTGATGTTGCTCATACTAATGACATTAGTAGATTGGTCGAGGGATTGTCGAAATATGTAATCGATGCTACTAAATTTGGAAACGTTTCACGATTCATCAATCACAGCTGCACACCAAATCTTACAAATTATCAAGTTCTTGTCGAAAGCATGGATTATCATCGAGCTCATATTGGTCTTTATGCAAATCGAGATATAGCTATAGGAGAAGAGATAACATTCGACTATCACTACAAAGTAGTAGATGACGAGGTATATCCGTGCTATTGTGGAGCCTCTTCATGTCGTGGGCGTCTTTACAAAATTTCGGGAGTGACAAAACAAGCCAATTTGTAG 4413 41.51 MAEVRVENLLINVEGLQKIEKKGPMEDTSDDLPVSEEHWSDDTYSDYEGQKLSCGSLEMECDDVNALNFCTESRLAPETSHLMVNSIESELTLNNREGEPSVSEPSWLEGDESLALWVKWRGKWQAGVRCARADWPLATLRAKPTHDRKNYFVIFFPHTRNYSWADTLLVRSINESPEPIIHKTHRAGLKMVRDLNIARRFIMKKLAVAILNFIDQLHSEALIESARDVMSWKDFAMEVSRCNGYCDLGRMLLKLQSMILPRLINSEWSKHSLLSWVQRCQDAQAAETVEMLKEELDDSILWTEINAHRDESMHPTFCSEWKTWKHEVIKWFSLSGSLSSCETMQRQTNDTPLSTSQQLGRKRPKLEIRRAEPHSSQVESKNSEPSTSLQIDSGFFSSLGGANVAVLAPESCKEEASRDVTSTESPSTVANKWDEIFVETGNSKSILPIEAELTPIKAIIGARPLDTGNRNRQCIAFIESKGRQCVRWANEGDVYCCVHLSTRFSSNSAKKQNIISADAPMCQGTTVLGTKCKHRSLYGSSFCKKHGPMSEMKSNYSFTENRLKRKNMDMISNLESTDGKDLVLVGDVESPLQVDPLSVGFADNLEQHPSNGNIATVALQCIGSCRQNDNSPCLESPKRHSLYCEKHLPSWLKRARNGKSRIVSKEVFMELLGDCRTQEVKIHLHQACELFYKLFKSILSLRNPVPKEVQFQWALSEASKNSGVKELFIKLVLLEKKRLKEIWGFGGEEHGQLLLSSKEEPAQIPLITLGCNDDETSIRCKICSEVFPDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLESHVQDRHHVSFVEQCMLIQCIPCGSHFGNTEQLWLHVLAVHPSDFRLSKLQKNYGSAGEDSPQKQELNSVSLEKSSENIHGERKFICRLCGLKFDLLPDLGRHHQAAHMGASLVSTCPSKRGIHYYAYKMKSGRLSRPRFKKSLTAASYRIRNKANATIKKRMQASKLLQNGDVNEQKHVPQLASIGRLIEPQCSSVAKILFSEIQKTKPHPTSFDILETARSACCKITLKALLENQYGLMPENLYLKAAKLCSENNVQVDWHLEGFSCPKGCKLFKECYLSPLTPSPNGFIHHGSRNSPAPADVELEADECHYVIDSHLLRHSSMQKGTILCDDISFGLESVPVVCVADEGVLDSLQISKGGSEHQNPNPSPWEGFTYVTKPILDKSLVLDTESFQLGCGCPDSACRPELCDHVYLFDNDFDDARDIYGKRMCGRLPYNDKGRVILEEGYLVYECNQKCSCGRTCPNRVLQNGVRAKLEVFLTEKKGWAVRAGETILRGTFVCEYIGEILNDDEAKKRYKRHVREGCHYFLDVAHTNDISRLVEGLSKYVIDATKFGNVSRFINHSCTPNLTNYQVLVESMDYHRAHIGLYANRDIAIGEEITFDYHYKVVDDEVYPCYCGASSCRGRLYKISGVTKQANL 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29213796 29220988 + Bma029241.1 Bma09g00337 88383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00337 1470 ProSiteProfiles Zinc finger C2H2 type domain profile. 913 941 IPR013087 -
Bma09g00337 1470 MobiDBLite consensus disorder prediction 21 40 - -
Bma09g00337 1470 Pfam Zinc finger C2H2-type, 3 repeats 814 937 IPR040689 -
Bma09g00337 1470 SMART c2h2final6 913 936 IPR013087 -
Bma09g00337 1470 SMART c2h2final6 846 869 IPR013087 -
Bma09g00337 1470 SMART c2h2final6 812 835 IPR013087 -
Bma09g00337 1470 SMART c2h2final6 778 801 IPR013087 -
Bma09g00337 1470 ProSitePatterns Zinc finger C2H2 type domain signature. 848 869 IPR013087 -
Bma09g00337 1470 MobiDBLite consensus disorder prediction 343 388 - -
Bma09g00337 1470 SUPERFAMILY SET domain 1150 1449 IPR046341 -
Bma09g00337 1470 SMART preset_2 1161 1289 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bma09g00337 1470 MobiDBLite consensus disorder prediction 362 377 - -
Bma09g00337 1470 Pfam SET domain 1316 1435 IPR001214 GO:0005515
Bma09g00337 1470 Pfam Pre-SET motif 1165 1297 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bma09g00337 1470 ProSitePatterns Zinc finger C2H2 type domain signature. 915 936 IPR013087 -
Bma09g00337 1470 ProSiteProfiles Zinc finger C2H2 type domain profile. 812 835 IPR013087 -
Bma09g00337 1470 ProSitePatterns Zinc finger C2H2 type domain signature. 780 801 IPR013087 -
Bma09g00337 1470 Gene3D Classic Zinc Finger 767 838 - -
Bma09g00337 1470 ProSiteProfiles Zinc finger C2H2 type domain profile. 778 806 IPR013087 -
Bma09g00337 1470 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 16 1459 - -
Bma09g00337 1470 ProSiteProfiles Post-SET domain profile. 1443 1459 IPR003616 -
Bma09g00337 1470 Gene3D SET domain 1153 1459 IPR046341 -
Bma09g00337 1470 ProSiteProfiles Pre-SET domain profile. 1226 1302 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bma09g00337 1470 MobiDBLite consensus disorder prediction 343 361 - -
Bma09g00337 1470 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 16 1459 - -
Bma09g00337 1470 ProSiteProfiles SET domain profile. 1305 1436 IPR001214 GO:0005515
Bma09g00337 1470 SMART set_7 1305 1442 IPR001214 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00337 - - - qsu:111985175 1928.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01339 Bma-Chr2:55867044 Bma09g00337 Bma-Chr9:29213796 9.85E-10 dispersed
Bma03g01471 Bma-Chr3:43485491 Bma09g00337 Bma-Chr9:29213796 1.56E-16 dispersed
Bma03g01472 Bma-Chr3:43567537 Bma09g00337 Bma-Chr9:29213796 3.99E-17 dispersed
Bma09g00337 Bma-Chr9:29213796 Bma12g00666 Bma-Chr12:27879320 6.24E-39 dispersed
Bma09g00337 Bma-Chr9:29213796 Bma05g00729 Bma-Chr5:43245166 1.08E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57838 PF05033 Pre-SET 3.00E-13 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00337 Bma_Chr09 FPKM 15.997475 14.352333 3.819894 1.921252 13.42331 10.149727 10.93541 0.477019 0.39271 0.320143