Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00339 ATGGCTGAAATTAGAGTTCCAAGAGTAGAACAAGGCCAAACTAAGATCAAGAATGTTCCGATCGCCGTCACTCCAGAAGGATTTTGGTGCTGCCCTTCTCCGGTTGTGTTTCAAAAGACACTAAAAGCTCAAAACCCTCTGAACAAATCCAAATCTTCCTCATCACCACCCAAGGCCTCTGTCCAGAAGAAACAAGCGTTGATTATAGACAAGAAGCCGGCTCTCGCCGAATCAGGATCTCAGTCTATCACCACCGACGATCGTAAATACAGCCCTGATTCGCCTGGATTGGACAGAGAGCCACGACCCAAGATTGAAAATGTTCCCAAGAAAGTTTCGATCGAGTTTGGTGAGCCTGGAACCAGCGATGTGAAGCTCATTTTGCTCGGGAAGCAAGGGATTTGTGTGAAGTTGAGTGTTCATAAGAATGTTTTGGTGGCCAACAGCCATTTTTTTGCTGATAAATTCTTAGAACGCGGAGTTGGTTTTTCTTGCCTGGAGATTGAAGATTGTGAAGATGTTGAAATATACGTCGAAACTGTCGGATTGATGTACAGCAAAGAAATGAGACAACGCCTGATCAAGCAAAGTGTTGCACGGGTTATTCGCATTCTCAAGGTTGCAGAGATTCTTGGGTTCAAGTCATGCATGCAGTCATGTCTCGACTATTTGGAAGCAGTTCCATGGGTAGGAGACGAAGAAGAAGAAAGGGTTGTCTCTTCAGTTTTACGGCTCCAAAGAGACGGTCTTGGAGTTACGCCGGTGTTGAAACGAGTATCTTCCGACGTTCTGAAACCACAAAACGACACATTCTCTCACGTCATCGAGCTTGTACTGAAAAGCAGTGAAGAGAGAAGCCGGCGAGAGATGAAATCGCTGGTCCTAAAGCTTCTTAGAGAGAATAACAATGGCGGGAGCAGTTCAAATCCAGACATCTGCAACGAAACTATCTATGGGTCCTGCCGTAAGTGCTTGGCTTCTCTGTTGTCACTGTTCAAGCAAGGCGCAGATGAAGATTTCCGTGACAGTAAAGAACCTCTGGCCAAGAAAATCGCTCTGGAGGCCGATAATCTGTCGTGGCTGTTTGAGATTTTGGCCGACGGGCAAGCTGCAGATGAATTTGCCTTGATGTGGGCGAACCAGGAAGAGTTATCGGCTCTACACAGAAAGTTACCGGCAAATTCTCGTTACCATGTAAGCTGCATTACAGGCCGGGTTTTCATCGGAATCGGAAAAGGAGAGCTTCTTCCGTCAAAAGAGACCCGTCAATTACTCTTACAGACGTGGCTAGAGCCATTGATGAACGACTACGGTTGGTTGCAGCATGGGTGCCGGTCGTTTGATCGGAAAATTGTGGAGGAAGGGATTGGGAGAACGATTCTGACTCTTCCGCTGGAAGATCAGAAGAGCATACTGCTTTCGTGGCTGGGAAAGTTCCTCAAGGCCGGAGATAATTGCCCGAACCTTCACCGAGCTTTTGAGGTGTGGTGGCGGAGGACTTTCGTCAGGCCCTTCGTTGAAGGTGAACCTGCTTCAGTGAGATAG 1545 47.38 MAEIRVPRVEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKTLKAQNPLNKSKSSSSPPKASVQKKQALIIDKKPALAESGSQSITTDDRKYSPDSPGLDREPRPKIENVPKKVSIEFGEPGTSDVKLILLGKQGICVKLSVHKNVLVANSHFFADKFLERGVGFSCLEIEDCEDVEIYVETVGLMYSKEMRQRLIKQSVARVIRILKVAEILGFKSCMQSCLDYLEAVPWVGDEEEERVVSSVLRLQRDGLGVTPVLKRVSSDVLKPQNDTFSHVIELVLKSSEERSRREMKSLVLKLLRENNNGGSSSNPDICNETIYGSCRKCLASLLSLFKQGADEDFRDSKEPLAKKIALEADNLSWLFEILADGQAADEFALMWANQEELSALHRKLPANSRYHVSCITGRVFIGIGKGELLPSKETRQLLLQTWLEPLMNDYGWLQHGCRSFDRKIVEEGIGRTILTLPLEDQKSILLSWLGKFLKAGDNCPNLHRAFEVWWRRTFVRPFVEGEPASVR 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29462782 29464605 + Bma029244.1 Bma09g00339 88385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00339 514 Pfam BTB/POZ domain 136 225 IPR000210 GO:0005515
Bma09g00339 514 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 509 IPR038920 -
Bma09g00339 514 Gene3D Potassium Channel Kv1.1; Chain A 116 240 IPR011333 -
Bma09g00339 514 SUPERFAMILY POZ domain 119 225 IPR011333 -
Bma09g00339 514 MobiDBLite consensus disorder prediction 76 104 - -
Bma09g00339 514 PANTHER BTB/POZ DOMAIN PROTEIN 1 509 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00339 - - - tcc:18611011 759.985
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00499 Bma-Chr6:24106201 Bma09g00339 Bma-Chr9:29462782 5.49E-09 dispersed
Bma07g01659 Bma-Chr7:52179179 Bma09g00339 Bma-Chr9:29462782 2.70E-107 dispersed
Bma09g00339 Bma-Chr9:29462782 Bma14g00603 Bma-Chr14:6554775 8.15E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57839 PF00651 BTB 7.40E-05 CL0033 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00339 Bma_Chr09 FPKM 0.0 0.0 2.082641 2.192459 0.0 1.730331 3.840303 0.0 0.0 0.0