Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00341 CAGGACACAATTGTTGGATTTCTACTAGCTGGAGTAGGTAATAATGACCTGAGGAGAAAAACAAATTACCTTATTGTGGACTCAAAAACAACTGTTAAACAAATTGAAGATGCCTTCAAGGAGTTCACAATAAGGGAGGATATTGCTGCAGTGCTTGTCAGCCAATACGTTGCAAACATGATGAGGTTTTTGGTGGACAGCTACAACAAGCCAATTCCAGTAATTCTGGAGATTCCTTCTAAAAATCATCCTTATGATCCCACTCAAGACTTCATCCTATCACGAGTGAAGAATCTCTTTTCTGCCGAGTCGGTGGCATCCAGTAGGCGTTGA 333 41.14 QDTIVGFLLAGVGNNDLRRKTNYLIVDSKTTVKQIEDAFKEFTIREDIAAVLVSQYVANMMRFLVDSYNKPIPVILEIPSKNHPYDPTQDFILSRVKNLFSAESVASSRR 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 29742307 29743537 + Bma029246.1 Bma09g00341 88387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00341 110 SUPERFAMILY AtpF-like 2 99 IPR036906 GO:0034220
Bma09g00341 110 TIGRFAM V_ATP_synt_F: V-type ATPase, F subunit 2 104 IPR005772 GO:0033180|GO:0046961|GO:1902600
Bma09g00341 110 PIRSF V-ATP_synth_F 1 103 IPR005772 GO:0033180|GO:0046961|GO:1902600
Bma09g00341 110 Gene3D ATPase, V1 complex, subunit F 1 102 IPR036906 GO:0034220
Bma09g00341 110 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 2 110 - -
Bma09g00341 110 Pfam ATP synthase (F/14-kDa) subunit 1 96 IPR008218 GO:0034220|GO:0046961
Bma09g00341 110 PANTHER V-TYPE PROTON ATPASE SUBUNIT F 2 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00341 Bma-Chr9:29742307 Bma09g00345 Bma-Chr9:30173426 1.57E-49 dispersed
Bma09g00341 Bma-Chr9:29742307 Bma09g00344 Bma-Chr9:30157382 3.11E-72 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00341 K02151 - tcc:18613243 190.274