Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00346 ATGGAGAATAATCCGTATGAGGCCGCGACCGATGATTTCCTAGAGCAAATTCTTGGTGTTCCTGCTTTCGCGCCGAATGAATTAGGCTTGGCAGGAAATGATGGTGGATTATCAGGAGCTGTGGCTCACGGTTCGATGATGCTGCAGCTCAGCTCCGGGGACGGCTCTTGCCACACGGCCTGCGTTGGTGGAGGAAGCGATGGGGGCGCAGGGTTTAGTAGCCCTGGTTTTCCCTTGGGGTTGAGCTTGGAGCAAGCAAAGTGTGGGCATCTGAAGCCTGAGGAGGCATCCGGTAGCGGCCCGCGGTTCCGCGACGAGGTTTTCCAAGGCCTACCAATTACCACCAATGTTAATGGAGCGCCACATCCTCCAGCAATGCGGCCAAGAGTTCGAGCTAGACGAGGACAAGCTACAGATCCCCATAGTATTGCTGAGAGGTTACGCAGGGAAAGAATTGCAGAGAGAGTCAGGGCATTGCAGGAACTGGTTCCTAGTGTAAACAAGACAGATAAAGCTGTCATGCTTGATGAAATAGTAGATTATGTGAAGTTCCTGCAACTCCAAATGAAGGTTTTAAGCATAAGTAGACTGGGAAGTGCTGGGGCCGTAGCACCTCTTATAACAGACATTTCATTATTATCACTTAAGGAAAATGGAAGAAACCGACCCGCCTGGGAGAAGTGGTCAGATGATTGCACAGAAAGACAAGTTGCTAAGTTAATGGAAGAAAATGTTGGTGCTGCTATGCAATTTCTTCAATCCAAGGCCATTTGTCTCATGCCTATCTCTTTAGCCTGCGCAATCGACCACAACAAGCCAGCTGACTCCAGCAGTGTGGTCAAGCCGGAGTCAAACCCACCTTACTAG 867 50.06 MENNPYEAATDDFLEQILGVPAFAPNELGLAGNDGGLSGAVAHGSMMLQLSSGDGSCHTACVGGGSDGGAGFSSPGFPLGLSLEQAKCGHLKPEEASGSGPRFRDEVFQGLPITTNVNGAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERVRALQELVPSVNKTDKAVMLDEIVDYVKFLQLQMKVLSISRLGSAGAVAPLITDISLLSLKENGRNRPAWEKWSDDCTERQVAKLMEENVGAAMQFLQSKAICLMPISLACAIDHNKPADSSSVVKPESNPPY 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30183026 30188241 + Bma029258.1 Bma09g00346 88392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00346 288 Pfam Helix-loop-helix DNA-binding domain 141 186 IPR011598 GO:0046983
Bma09g00346 288 Gene3D - 131 192 IPR036638 GO:0046983
Bma09g00346 288 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 274 - -
Bma09g00346 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 194 IPR036638 GO:0046983
Bma09g00346 288 SMART finulus 142 191 IPR011598 GO:0046983
Bma09g00346 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Bma09g00346 288 MobiDBLite consensus disorder prediction 113 140 - -
Bma09g00346 288 PANTHER TRANSCRIPTION FACTOR UNE12 ISOFORM X1 7 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00346 Bma-Chr9:30183026 Bma09g00617 Bma-Chr9:43393282 0 dispersed
Bma09g00346 Bma-Chr9:30183026 Bma14g01254 Bma-Chr14:20440056 3.82E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57840 PF00010 HLH 6.20E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00346 - - pop:18099657 374.015