Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00348 ATGTCCCAAGACTATCACCAAGGAATGTTAAGCTTCTCCAATGGCGGTTTGGAGAGATCGGCCATGGCCATGGCTCGACAACAAGAGTCGAACCCTCACCAACAACAACAGATCCGGAGGGAGAAGCTGCGGATGCAAGGGTTCGACCCGACACCGCCGCCGTTAGTAGGGGTAGAAGAGGAAGAATCCACCGGATTCAATGTTTACGAGAACGCCGGAATGTTATCGGAAATGTTCAATTACCAACCTGAAATGGCGGAGCAGCCGAGTTTCCGACCGGCAAGGACGGCGAACAACGAGTGGTACGCTAACAGACAAGGAATGGTGGTGGGATTAGGACCATTAGAAGAATTAAAGGCCAGCCGTAATCACCACCATCAGATTTCCACCATTAGTGCTGACTCAGCGGCAGCCATGCAGCTTTTTCTGATGAATCCACAGCCAAGGTCGCCATCACCGCCTCCTCCTCCTTCCTCCACCCTCCACATGCTCCTTCCAAATCCATCTTCTTCTCTCCAATCTTATGGTCAATTCACATGGATTCCAGACGGAGGAAACGCAAACCCAGCTAGTGAAATTAGAGGAATTCCAGAAAGTCAAGGACTCTCTCTCTCACTCTCGTCTTCTTTACCACACCTGGAAGCAGCAAAAGCCGAAGAACTGAGACTCGCCGGAAACGGCGGATTCTTGTTCTACAATCAAGGAGGGGCTTCTTCATCATCCCAATATTCATTTAGAAATTTAGTGAATCAAAACCAGCAATTAACTGGCTCAGATCAACCGATTCACGTCACGTTTGGAACTTCACTCGGATCAGTAAATTTGCTACGAAGCTCAAAGTATTCTAAGGCTGCACAAGAACTACTGGAAGAATTTTGCAGCGTCGGGAAAGCTCAGTTGAAGAGAAACAAGTCCATCAATGAAAGAAACTCCAACCCTAGCCCGAATCTGGCAGGCGGCACTAATGGCAGTGGAGTAGGCGGCGGAGGCGGCGGCTCTTCGTCTTCTTCAAAAGATCAACAACCTCCTTTGTCATCTTGTGATAGAATTGAGCATCAAAGGAGGAAGGTGGATCGCAGATACCAAAACTACTGTGAGCAAATGCAGATAGTGGTGAATTCATTTGACATGGTGATGGGGTTCGGAGCAGCAGCCCTCTACACGGCCCTCACCCAGAAGGCAATGTCTCGCCACTTTCGATGCCTCAAGGATGCGATTGGCGCGCAGCTAAAGCACAGCTGCGAGCTTCTGGGCGAGAAAGACGCAGGAGGGACGTCTGGTTTGACAAAAGGAGAGACGCCCAGGCTGAAGATGTTGGAGCAGAGCTTGAGAAACCAGAGAGCTTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGCGACCACAACGAGGCTTGCCTGAAAGATCTGTCAACATTTTGAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTATCCAAGCGACGCAGATAAGCAACTGTTGGCTCGACAGACAGGTTTATCAAGAAATCAGGTTAGTGTACTCTCCTCCACTTTTACTCTCATACACCACCATGATCAAGGCCAGTCAATAGAGAGAGAAACAAGAGAGAAGAGAGAGAGAGGTTTATGTTTTTTGTTTGTCTTGCAGGTGTCGAACTGGTTCATTAATGCTAGGGTTAGGCTATGGAAACCCATGGTGGAAGATATGTATCAGCAAGAATCAAAAGATGAGGAGGAGGAGGAGGGGGAGGAGGATCAAGATAGATCAGAAGAGAGAGAAAGGAACAAAAAAAGTGTGATTTCACAAACTCCAACGCTGTCTCAGGCAACCTCTACAACATCACCACCAACAACCAAAACGACAACTCCACCACCATCGACAACAAAAACGACGACCAAAAGATCTCACTTCAATCCACAAGAAAGCGACCCTTCACTCACTGCAATCAATGCCCAAACCTCCTCGGAAATCCAAGCCAATCAACCCATCTCTTCTGTCACGCCCAATGACCTCCCGCCACCTCACCTTTTGCAGACCTTTCAGGATGCCCAGTTCGGCCGGAAACCCTTTGTAGGTGGCGGCGACTACGGCACCACCTCCGACAGTGGGTCTTCTGTCATAAGATTCGGGACGAAGGTGGCCGGTGATGTCTCGCTCACCTTAGGCCTACGCCATGTCGGAAACTTGCCCGAGAAGAATTCCTTCTCCGTACGGGATTTCGGTGGTTATTAA 2217 49.21 MSQDYHQGMLSFSNGGLERSAMAMARQQESNPHQQQQIRREKLRMQGFDPTPPPLVGVEEEESTGFNVYENAGMLSEMFNYQPEMAEQPSFRPARTANNEWYANRQGMVVGLGPLEELKASRNHHHQISTISADSAAAMQLFLMNPQPRSPSPPPPPSSTLHMLLPNPSSSLQSYGQFTWIPDGGNANPASEIRGIPESQGLSLSLSSSLPHLEAAKAEELRLAGNGGFLFYNQGGASSSSQYSFRNLVNQNQQLTGSDQPIHVTFGTSLGSVNLLRSSKYSKAAQELLEEFCSVGKAQLKRNKSINERNSNPSPNLAGGTNGSGVGGGGGGSSSSSKDQQPPLSSCDRIEHQRRKVDRRYQNYCEQMQIVVNSFDMVMGFGAAALYTALTQKAMSRHFRCLKDAIGAQLKHSCELLGEKDAGGTSGLTKGETPRLKMLEQSLRNQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKQLLARQTGLSRNQVSVLSSTFTLIHHHDQGQSIERETREKRERGLCFLFVLQVSNWFINARVRLWKPMVEDMYQQESKDEEEEEGEEDQDRSEERERNKKSVISQTPTLSQATSTTSPPTTKTTTPPPSTTKTTTKRSHFNPQESDPSLTAINAQTSSEIQANQPISSVTPNDLPPPHLLQTFQDAQFGRKPFVGGGDYGTTSDSGSSVIRFGTKVAGDVSLTLGLRHVGNLPEKNSFSVRDFGGY 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30200720 30205804 - Bma029260.2 Bma09g00348 88394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00348 738 Pfam Associated with HOX 276 406 IPR006563 -
Bma09g00348 738 MobiDBLite consensus disorder prediction 303 352 - -
Bma09g00348 738 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 544 727 - -
Bma09g00348 738 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 53 507 - -
Bma09g00348 738 CDD homeodomain 460 508 IPR001356 GO:0003677
Bma09g00348 738 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 544 727 - -
Bma09g00348 738 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 507 - -
Bma09g00348 738 MobiDBLite consensus disorder prediction 567 582 - -
Bma09g00348 738 Coils Coil 570 590 - -
Bma09g00348 738 SMART prehox3 270 408 IPR006563 -
Bma09g00348 738 SUPERFAMILY Homeodomain-like 462 508 IPR009057 -
Bma09g00348 738 MobiDBLite consensus disorder prediction 305 347 - -
Bma09g00348 738 Gene3D - 454 573 - -
Bma09g00348 738 MobiDBLite consensus disorder prediction 594 640 - -
Bma09g00348 738 SMART HOX_1 460 563 IPR001356 GO:0003677
Bma09g00348 738 Pfam Homeobox KN domain 477 555 IPR008422 GO:0003677|GO:0006355
Bma09g00348 738 MobiDBLite consensus disorder prediction 145 166 - -
Bma09g00348 738 MobiDBLite consensus disorder prediction 147 162 - -
Bma09g00348 738 MobiDBLite consensus disorder prediction 567 640 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01078 Bma09g00348 CCT
Bma03g01078 Bma09g00348 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01078 Bma-Chr3:13387749 Bma09g00348 Bma-Chr9:30200720 1.30E-144 dispersed
Bma09g00348 Bma-Chr9:30200720 Bma10g00129 Bma-Chr10:1167298 7.31E-70 dispersed
Bma09g00348 Bma-Chr9:30200720 Bma14g00602 Bma-Chr14:6539299 2.09E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00348 - - vvi:100261554 723.391