Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00351 ATGGGTTTCTCCATCTCCACCTTCGTCTTCGCTCTCGCCATTTTTGGTACCTTCTCTTTGATCCGAGCTCAGCAGCCTTATGTTGGGGCGACGACGACAGATTGTTCCAACGACCATAATTCATCTTCTGGTCTCGGTTACTTCTGCAATGGCCTCAATAGAAGTTGCCAAGCTTATCTGACTTTCAGATCCATAGCTTCTTACAACACAGTTTCCGCCATTTCTGATCTATTGGGATCCGACCCATCTCAGCTCGCTCAGCTAAACTCGGTTTCCGAGTCTGCATCATTTGAGACGAACAAATTAGTTCTCGTTCCAATCAATTGTTCGTGTTCAGGTCAGTTCTACCAGAAAAACGTATCTTATGCGATTCGAAAAGATGAAGGCTATCTTGTTGTTGCAAACAATACGTTTCAAAGTTTATCTACTTGTCAAGCTATACGGAATCAGAATAGCGATCTTAGTGAGGCTAATTTGGCTATTGGTCGAATAATAGTTGTTCCTCTTAGATGTGCTTGCCCTACGAAGAACCAATTTGATTTGGGCATTAATTATCTGCTGAGTTACTTAATTTCTAAGGGTGAAACTGTTGATTCCATTGGTGAAAGATTCGGTGTAGAAATTGGAAGAATTAATGACGCTAATGAGCTATCACAACAATCCTTAATTAATTACTTCACTACTCTTTTAGTTCCTCTGCAAAACCAGCCATCAAGTTCTCAAACCGTCGATTCTCCGCCGCCTCCTCCGCCTCCCCCTTTCTCTCCTCCGAGTTCTAACACCAATAAAAGCTCAAATAAAACATGGGTTTATATTCTTGTAGGCGTTCTTGGAGGATTAGGCCTCATGTTGATCATGGGGATCTTTGTTTTTTTGAAAAGATTCCAGAAAAGAAAGAAGAAAACAGATTCAGCGATCGATTCTGACATCGTTGTGTCGAATGTGAAGCCTTTGCGGAAAAAGGAGGAGGGGGATAGCGAATCTCTTGAATTCTTGGAGAGCATAGCCAGTGTAGCTCAATCCCTCAAAGTGTACAGCTTTAAGGAGCTTCAATATGCAACTGATAATTTCGGTCCAGCAAATTGGATCAAAGGGTCTGTTTATCGCGGGACTATCAATGGTGATTTAGCAGCGATTAAGAAAATGAATGGGGACGTATCAAAAGAAATCAACCTTCTGAACAAAGTGAACCACTCGAATCTCATCTGCCTTTCGGGTGTTTGTTTCAACGAGGGCCATTGGTATCTCGTCTACGAATACGCCGCAAACGGCCCCTTGAGCGAATGGATCCACTCCAACAATGGAGACTCCAAGTTTTTGAATTGGATTCAGCGAATACAAATCGCGTTGGACGTGGCCACGGGGCTCGATTATCTCCATAGCTTCATGAATCCTCCTCATGTCCACAAGGATATAAAAGGTAGTAACGTTCTTCTCGACACCGAATTCAGAGCTAAAATAGCAAACTTTGGCCTCGCAAGATCCGGCGAGTCGCAGGAAGGCGAATTCGCATTGACTCGGCACATTGTCGGAACCAGAGGCTACATGGCTCCAGAGTATGTCGAAAATGGTTTGATCTCTTCTAAACTCGATGTGTATTCGTTTGGAATTCTGATGCTGGAAATTCTGACCGGGAAAGAGGTTTCCGAACTGTATGGGGAGGAGAATGCAATCGTTTGGGATGTAGTAAACGGCAAGCTGAGCTCGGAAGCTCAGCGGGAAAGTTTAAGGCGCGTTATGGATCCTTCAATGCAAGGGTTGTATCCTCTAGAACTTGCAGTTTTTGTGATGAGTTTGATTAGTTGTTGCTTGAAGAAAGATCCGGCTGATAGGTTGTCCATGGATGAGATTGTGCAGTCCCTCTCAAGAACCTTGAGTGGCTCGCTGTCCTGGGAGTCATCTCAAAGCATTTCAAAGTAG 1920 43.85 MGFSISTFVFALAIFGTFSLIRAQQPYVGATTTDCSNDHNSSSGLGYFCNGLNRSCQAYLTFRSIASYNTVSAISDLLGSDPSQLAQLNSVSESASFETNKLVLVPINCSCSGQFYQKNVSYAIRKDEGYLVVANNTFQSLSTCQAIRNQNSDLSEANLAIGRIIVVPLRCACPTKNQFDLGINYLLSYLISKGETVDSIGERFGVEIGRINDANELSQQSLINYFTTLLVPLQNQPSSSQTVDSPPPPPPPPFSPPSSNTNKSSNKTWVYILVGVLGGLGLMLIMGIFVFLKRFQKRKKKTDSAIDSDIVVSNVKPLRKKEEGDSESLEFLESIASVAQSLKVYSFKELQYATDNFGPANWIKGSVYRGTINGDLAAIKKMNGDVSKEINLLNKVNHSNLICLSGVCFNEGHWYLVYEYAANGPLSEWIHSNNGDSKFLNWIQRIQIALDVATGLDYLHSFMNPPHVHKDIKGSNVLLDTEFRAKIANFGLARSGESQEGEFALTRHIVGTRGYMAPEYVENGLISSKLDVYSFGILMLEILTGKEVSELYGEENAIVWDVVNGKLSSEAQRESLRRVMDPSMQGLYPLELAVFVMSLISCCLKKDPADRLSMDEIVQSLSRTLSGSLSWESSQSISK 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30326422 30328341 - Bma029264.1 Bma09g00351 88397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00351 639 Pfam LysM domain 189 232 IPR018392 -
Bma09g00351 639 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 1 636 - -
Bma09g00351 639 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 636 - -
Bma09g00351 639 MobiDBLite consensus disorder prediction 242 258 - -
Bma09g00351 639 Gene3D Phosphorylase Kinase; domain 1 328 420 - -
Bma09g00351 639 SUPERFAMILY Protein kinase-like (PK-like) 338 621 IPR011009 -
Bma09g00351 639 MobiDBLite consensus disorder prediction 236 262 - -
Bma09g00351 639 Pfam Protein kinase domain 379 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00351 639 SMART serkin_6 362 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00351 639 ProSiteProfiles Protein kinase domain profile. 315 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00351 639 ProSiteProfiles LysM domain profile. 187 231 IPR018392 -
Bma09g00351 639 Gene3D Transferase(Phosphotransferase) domain 1 422 634 - -
Bma09g00351 639 Gene3D LysM domain 187 245 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00351 - - - jre:108995327 751.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00724 Bma-Chr8:43058139 Bma09g00351 Bma-Chr9:30326422 9.90E-06 dispersed
Bma09g00351 Bma-Chr9:30326422 Bma13g01247 Bma-Chr13:45772875 9.13E-09 dispersed
Bma09g00351 Bma-Chr9:30326422 Bma08g00556 Bma-Chr8:33652638 7.98E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66696 PF00069 Pkinase 4.50E-41 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00351 Bma_Chr09 FPKM 6.828328 7.954906 11.036876 10.825483 1.612343 2.036082 2.167818 14.374207 15.940061 14.038487