Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00356 ATGAGCTCTGTGAGTTCAAGCACATGGATTCAATCATGCTCCGTTTTAAATGGACCCGGTAGATCCAGATCCAAATCCAAATCCCCCAATTCCCATTTCAATCCTTTGCTCAGAAAGATGCCCATGTCCTTCTCTTGTTCTAATGGCGGATTATCGGGGTCTCCGCCGTTTTCGTCCTTCTCCGTCACTGCGGTGCTCACCAAGGAAGAGACCCTAAAAGAAAAGGAGGAGGAAGAGAAACCCTTGTTCGATTTCAAGGGCTACATGATTCAGAAAGCTAATTCGGTGAATAAGGCGTTGGATGATGCTGTTTCGCTCCGAGAACCACTCAAAATCCATGAAGCTATGCGCTATTCTCTCTTGGCCGGCGGCAAGCGGGTCCGCCCAGTGCTCTGCATCGCCGCATGCGAGCTCGTCGGTGGCCTCGAATCCATGGCTATGCCAGCGGCCTGCGCGGTGGAGATGATTCACACCATGTCTCTGATCCACGACGACCTCCCTTGTATGGACAACGACGATCTACGACGAGGGAAGCCCACCAACCACAAAGTCTTCGGGGAGGACGTGGCGGTCCTGGCCGGAGACGCCCTTTTGGCGTTTGCTTTCGAACACATCGCCGTATCGACTGTTGGAGTAACTCCGGCCAGGATAGTGTGCGCGATTGGAGAGCTAGCAAAGTCGATTGGGACAGAGGGATTAGTTGCCGGACAAGTGGTTGATATTAGCTCGGAGGGACTTCCCGGAGTTGGGTTGGAGCAGCTCGAGTTCATCCATGTCCACAAGACGGCCGCCCTGCTGGAAGGGTCGGTGGTGCTGGGAGCAATCATGGGAGGCGGATCCAGCGAGGAGGTAGAGAAATTGAGGACCTTTTCCAGGTACATTGGGCTGCTCTTTCAGGTGGTGGACGACATTCTGGATGTAACGAAGTCGTCACACGAGCTCGGAAAGACGGCCGGAAAAGATCTCGTTTCCGACAAAGTTACCTACCCGAAGCTCTTAGGCATCGAAAAATCAAGGGAGTTTGCTGAGAAATTGAACAGAGATGCAAAGGAGCAGCTTTCTGGGTTTGATCCTCGCAAGGCTGCTCCATTGATTGCTTTGACTAATTATATTTCTTACAGGCAAAACTAG 1131 52.25 MSSVSSSTWIQSCSVLNGPGRSRSKSKSPNSHFNPLLRKMPMSFSCSNGGLSGSPPFSSFSVTAVLTKEETLKEKEEEEKPLFDFKGYMIQKANSVNKALDDAVSLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGLESMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAVSTVGVTPARIVCAIGELAKSIGTEGLVAGQVVDISSEGLPGVGLEQLEFIHVHKTAALLEGSVVLGAIMGGGSSEEVEKLRTFSRYIGLLFQVVDDILDVTKSSHELGKTAGKDLVSDKVTYPKLLGIEKSREFAEKLNRDAKEQLSGFDPRKAAPLIALTNYISYRQN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 30503049 30504179 - Bma029270.1 Bma09g00356 88402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00356 376 Gene3D Farnesyl Diphosphate Synthase 82 376 IPR008949 -
Bma09g00356 376 SFLD Polyprenyl Transferase Like 89 374 - -
Bma09g00356 376 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 376 - -
Bma09g00356 376 ProSitePatterns Polyprenyl synthases signature 2. 294 306 IPR033749 -
Bma09g00356 376 SUPERFAMILY Terpenoid synthases 86 357 IPR008949 -
Bma09g00356 376 CDD Trans_IPPS_HT 112 374 IPR000092 GO:0008299
Bma09g00356 376 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 376 - -
Bma09g00356 376 ProSitePatterns Polyprenyl synthases signature 1. 161 177 IPR033749 -
Bma09g00356 376 Pfam Polyprenyl synthetase 112 345 IPR000092 GO:0008299
Bma09g00356 376 SFLD Isoprenoid Synthase Type I 89 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00356 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - zju:107424859 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01149 Bma-Chr1:12459997 Bma09g00356 Bma-Chr9:30503049 9.25E-135 dispersed
Bma03g00622 Bma-Chr3:5131003 Bma09g00356 Bma-Chr9:30503049 1.08E-76 dispersed
Bma09g00356 Bma-Chr9:30503049 Bma10g00467 Bma-Chr10:5287820 9.04E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g916 . . . . . . Bma09g00356 . . . . Cma07g00754 . Car07g00741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00249 . . . . Cmo07g00777 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002369 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00356 Bma_Chr09 FPKM 0.002376 0.050785 1.58819 0.891699 0.513341 0.633801 0.161812 13.3818 12.859004 13.867164