Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00395 ATGGATATAACCAATAAGCTCACAAACAACACCACTACTTGGGATCTTGACCTAATGGCCATGGAAGAACATCTTCTTCACAGCCAAGTTCCTGTCCCTCCTTACCTCTGGCCGTACTTCCCCACTCCCGTCGATCAAACCACACCCAATCAAGCACCGACCCCGAGTCAGTTTGGAGATCCAGTGGCGAATCCTACAGACGGCGGCGAACAAGAGACTGATCGAGAAGAGCTTGGCGCAGTGAAAGAAATGATGTATAGAATCGCATCTATGCAGCCAGTGGACATCGACCCAGCAACCATCCGGAAGCCCAAACGAAAAAACGTTCGAATTAGCGACGACCCTCAGAGCGTCGCCGCCCGTTTACGGAGAGAGAGAATAAGCGAGAAGATACGAATCCTCCAACGTCTCGTTCCGGGAGGAACCAAACTGGACACGGCTTCCATGCTGGACGAAGCAATTCGATACGTCAAGTTCTTGAAAAGACAAATCCGCTTTTTACAGTCAAATCACCATACTCAATGCGTTAATGTCGCCATTGGGTCATCTTCTTTAATGCCAATAGACTGGTCTTTGAGAGCCAACGGCGGTGCAACCTCCGATGAACCGTGA 612 49.84 MDITNKLTNNTTTWDLDLMAMEEHLLHSQVPVPPYLWPYFPTPVDQTTPNQAPTPSQFGDPVANPTDGGEQETDREELGAVKEMMYRIASMQPVDIDPATIRKPKRKNVRISDDPQSVAARLRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRFLQSNHHTQCVNVAIGSSSLMPIDWSLRANGGATSDEP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 33200662 33201273 + Bma029347.1 Bma09g00395 88441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00395 203 MobiDBLite consensus disorder prediction 46 61 - -
Bma09g00395 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 171 IPR036638 GO:0046983
Bma09g00395 203 Coils Coil 150 170 - -
Bma09g00395 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Bma09g00395 203 SMART finulus 117 166 IPR011598 GO:0046983
Bma09g00395 203 MobiDBLite consensus disorder prediction 46 75 - -
Bma09g00395 203 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 64 180 - -
Bma09g00395 203 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 64 180 IPR045843 GO:0003700|GO:0006355
Bma09g00395 203 CDD bHLH_AtIND_like 112 170 - -
Bma09g00395 203 Pfam Helix-loop-helix DNA-binding domain 121 160 IPR011598 GO:0046983
Bma09g00395 203 Gene3D - 115 178 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02271 Bma-Chr1:79860933 Bma09g00395 Bma-Chr9:33200662 1.88E-40 dispersed
Bma03g00500 Bma-Chr3:3921481 Bma09g00395 Bma-Chr9:33200662 1.93E-13 dispersed
Bma05g00038 Bma-Chr5:2140989 Bma09g00395 Bma-Chr9:33200662 2.95E-41 dispersed
Bma09g00395 Bma-Chr9:33200662 Bma10g00756 Bma-Chr10:12002439 9.80E-31 dispersed
Bma09g00395 Bma-Chr9:33200662 Bma04g00160 Bma-Chr4:1391143 1.15E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57843 PF00010 HLH 3.60E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00395 - - pop:7479127 207.994