Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00422 TTAATTGCAAAAACAATGAAACCCTCTTCCACCTATCCTCACCTCTCTATCCTCCTCCTCCTCCTCGCCTTTCTCTCTCTAAAAGCTTCATCGTCGCCTTCTAGAGATGCCCAACAGCTGATCAACTTCAAAGCTTCACTTCCCGACCCTTCTCTGCTTCAAAACTGGCTCTCCAATGGCGACCCCTGTTCTTTCTCTCACATTACGTGCAAAGAATCCAGAGTTTCCGCCATAGACCTGAGCTTCATCCCCTTAAGCTCAAATTTCAGCTCCGTTTTCTCTTCCCTTTTCGCACTCGACTTCTTAGAATCCATCTCGCTGAAATCCACTAATCTTACCGGCGCCATTTTGGTATCTTCTGGATCTAAGTGCAGCTCTTTGTTGAGCGCCGTAGATCTATCTCAGAACAGCTTGTTTGGCCCCATTTCAAACGCTTCTAACATGGGTTCTTGCTCAAATTTGAAAAGTCTAAATCTGTCGTTCAATTATTTTGATTTTCCAGTGAAGGATGTCCCCGGATTGCAGCTGGATTTGCAGGTTCTTGATTTTTCTTTCAATAAAATCGTGGGTTCGAACGTGTTACCTTGGATTTTGTCCGCTGGCTGCACCGAAATGCAACACTTGGCGATAAAGGGAAACAAAATCAGCGGGGAAATTGATTTCTCTTCGTGCAAGAATTTGGAGTATTTGGATATCTCTTCCAACAATTTCTCGGCGATTATTCCTTTTTTCGGAGATTGCTCCGTTTTGGAATACCTTGACATCTCCAGCAACAAGTTTTCCTTCGACGTCGGACGAGCTCTCCCTGGTTGCAAACAGCTCAGCTTCCTTAATCTCTCCACAAACCAGCTTTCCGGTCAAATACCGGCTTTCTCTTCCCAGAACTTAAGGTTTCTCTCTCTGTCTGGCAACGATTTTCAGGGCCAGATTCCGGCCCATCTTGCGGATTCGTGCTCTGGTTTGATAGAACTAGACCTTTCGCTAAATAACTTATCCGGTGAAGTTCCTTCTGCTCTGGGTTTGTGTTCTTCTCTTCAATTTTTGGATATTTCGCGCAATAATTTATCTGGTGAATTTCCCATTTCCATCTTCACTTCAATGGTTAGCTTGAAGGTGCTTTCTCTCTCAGACAACAAATTTTCTGGGTTGCTGCCGGATTCTCTTTCTAATCTCACCAGCTTGGAGACTTTGGATCTAAGTTCGAATAATTTCTCTGGGTCGATTCCGTCAATGCTCTGCCAGTACTCTGGCAACAACTTAAAGGAGATGTTTCTCCAGAATAATCTGTTAACGGGTTCTATTCCGGAGACTCTGAGCAACTGTTCTCAGCTCGTTTCTCTTGATTTGAGCTTCAATTTTCTCACCGGAGCTATTCCATCCAGCCTAGGCTTCCTTTCTAAGCTCCGGAATCTGATGATTTGGTTGAATCAGCTTGAAGGACAGATCCCGGAAACGCTGAAGTTCATTCCGGCGCTTGAGAATCTGATTCTTGATTTCAACTTTCTCACCGGAACTATTCCCTCCGGACTAAGCAACTGCACGAACCTGAACTGGATTTCCCTATCCAACAACCAATTAAGTGGCGAGATCCCAGCTTGGATAGGCGGTCTTCCTAGCCTAGCCATCCTCAAACTAAGCAACAACTCATTCTCTGGCAGAATACCCCCGGAGCTCGGGGACTGCCGGAGCTTGATATGGTTGGACCTCAACACCAACTTCTTAAATGGGACGATTCCCCCGGAGCTTTTCAGGCAATCTGGCAACATTGCGGTGAACTTCATCACCGGAAAATCATATGTTTACATCAAAACCGACGGCAGCAAGGAGTGTCACGGAGCTGGAAGTTTACTGGAATTTGCCGGAATTCGTCAAGAACAAGTGAACAGAATCTCAAGCAGAAGTCCCTGCAACTTCACCAGAGTTTACAGAGGTATCACCCAGCCCACATTTAACCACAATGGATCCATGATTTTTCTTGATATTTCTCATAACATGTTATCTGGTAGTATCCCCAAAGAGATTGGCTCGACAAATTATCTTTACATTCTGAATTTGGGTCATAACAAACTGACTGGAACGATCCCTCAAGAACTCGGCAACCTCAGAAGTCTCAACATTCTTGATCTCTCGAGTAACATGCTCGAAGGGTCGATCCCGCCCTCTTTGACCGGCCTTTCCTTGCTTACAGAGATTAATTTGTCTAATAATCTCTTGAATGGAACAATCCCAGAATCGGGTCAGTTCGAAACTTTGCCACCGTCTGGTTTTCTGAACAATTCCGGCCTCTGTGGATACCCTCTTCCCAAATGTGGGGCTGATTCCGGCCCAAGTGTGGACTTCCAACACGAGAAGTCCCACCGGAAACAAGCTTCCCTTGCCGGAAGCGTGGCAATGGGCCTGTTGTTTTCACTTTTCTGCATATTTGGTTTGATCATTGTTGCCATAGAAACCAGGAAGAGAAGGAAGAAGAAGGATTTGACTCTCGATATTTACGTGGACAGCCATTCTCAATCAGGCACTGCAAATACGAGCTGGAAGCTAACCAGTGCTCGAGAAGCATTAAGCATTAATCTTGCCACCTTTGAGAAACCATTACGAAAGCTCACATTTGCAGACCTTCTCGAGGCCACTAATGGCTTCCACAATGACAGCCTAGTCGGCTCCGGCGGATTTGGTGATGTTTACAAAGCGAATTTGAAGGACGGAAGCGTTGTGGCGATTAAGAAACTAATACATATAAGTGGGCAGGGGGATAGAGAATTCACAGCAGAAATGGAAACAATTGGAAAAATCAAGCACAGAAACCTCGTCCCCCTCCTCGGATATTGCAAAGTCGGAGAAGAACGGCTTCTGGTTTATGAGTACATGAAATACGGAAGCCTCGAAGACGTTTTACACGACCAGAAAAAGGTTGGAATCAAGCTGAATTGGGGAGCGAGGAGGAAAATTGCCATTGGAGCAGCAAGAGGACTAGCTTTTCTTCACCATAATTGCACTCCCCACATAATTCATAGAGACATGAAATCGAGCAATGTTCTGCTCGACGAGAATTTAGAAGCTCGAGTCTCGGATTTCGGAATGGCGAGGCTGATGAGTACGATGGACACCCATTTGAGCGTTAGCACACTCGCTGGAACTCCTGGCTATGTCCCACCAGAGTACTACCAGAGCTTCCGATGTTCCACGAAAGGGGATGTTTATAGCTACGGAGTCGTTCTACTCGAGCTTCTAACGGGGAAACGACCAACGGACTCCATAGATTTCGGGGATAATAATCTGGTCGGATGGGTCAAAATGCATGCCAAATTGAAAATAAGCAATGTTTTCGATCAGGAGCTCATGAAAGAGGATCCAAACCTTGAAATCGAGCTTTTGCAGCATTTGAAGGTAGCCTGTGCTTGCCTGGACGACCGGCCGTGGAGGCGGCCGACCATGATTCAAGTGATGGCGATGTTTAAGGAAATTCAGGCCGGGTTGGGAATTGATTCCCAAACTACGATTTCATCGGAAGGCAAAGGATTTGGCGGGGTCGGCGGAGTAGAGATGAGCATAAAAGAAGGGCCAGAACTCAGCAAGCAGTAG 3582 45.98 LIAKTMKPSSTYPHLSILLLLLAFLSLKASSSPSRDAQQLINFKASLPDPSLLQNWLSNGDPCSFSHITCKESRVSAIDLSFIPLSSNFSSVFSSLFALDFLESISLKSTNLTGAILVSSGSKCSSLLSAVDLSQNSLFGPISNASNMGSCSNLKSLNLSFNYFDFPVKDVPGLQLDLQVLDFSFNKIVGSNVLPWILSAGCTEMQHLAIKGNKISGEIDFSSCKNLEYLDISSNNFSAIIPFFGDCSVLEYLDISSNKFSFDVGRALPGCKQLSFLNLSTNQLSGQIPAFSSQNLRFLSLSGNDFQGQIPAHLADSCSGLIELDLSLNNLSGEVPSALGLCSSLQFLDISRNNLSGEFPISIFTSMVSLKVLSLSDNKFSGLLPDSLSNLTSLETLDLSSNNFSGSIPSMLCQYSGNNLKEMFLQNNLLTGSIPETLSNCSQLVSLDLSFNFLTGAIPSSLGFLSKLRNLMIWLNQLEGQIPETLKFIPALENLILDFNFLTGTIPSGLSNCTNLNWISLSNNQLSGEIPAWIGGLPSLAILKLSNNSFSGRIPPELGDCRSLIWLDLNTNFLNGTIPPELFRQSGNIAVNFITGKSYVYIKTDGSKECHGAGSLLEFAGIRQEQVNRISSRSPCNFTRVYRGITQPTFNHNGSMIFLDISHNMLSGSIPKEIGSTNYLYILNLGHNKLTGTIPQELGNLRSLNILDLSSNMLEGSIPPSLTGLSLLTEINLSNNLLNGTIPESGQFETLPPSGFLNNSGLCGYPLPKCGADSGPSVDFQHEKSHRKQASLAGSVAMGLLFSLFCIFGLIIVAIETRKRRKKKDLTLDIYVDSHSQSGTANTSWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLVGSGGFGDVYKANLKDGSVVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKVGIKLNWGARRKIAIGAARGLAFLHHNCTPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSTMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSIDFGDNNLVGWVKMHAKLKISNVFDQELMKEDPNLEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGLGIDSQTTISSEGKGFGGVGGVEMSIKEGPELSKQ 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35344749 35348330 + Bma029393.1 Bma09g00422 88468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00422 1193 ProSiteProfiles Protein kinase domain profile. 880 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00422 1193 Pfam Protein kinase domain 880 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma09g00422 1193 SMART LRR_typ_2 391 415 IPR003591 -
Bma09g00422 1193 SMART LRR_typ_2 537 561 IPR003591 -
Bma09g00422 1193 SMART LRR_typ_2 562 585 IPR003591 -
Bma09g00422 1193 SMART LRR_typ_2 725 758 IPR003591 -
Bma09g00422 1193 SMART LRR_typ_2 701 724 IPR003591 -
Bma09g00422 1193 SMART LRR_typ_2 489 513 IPR003591 -
Bma09g00422 1193 SMART LRR_typ_2 367 390 IPR003591 -
Bma09g00422 1193 Gene3D Phosphorylase Kinase; domain 1 840 955 - -
Bma09g00422 1193 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Bma09g00422 1193 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Bma09g00422 1193 Pfam Leucine rich repeat 362 404 IPR001611 GO:0005515
Bma09g00422 1193 Pfam Leucine rich repeat 226 284 IPR001611 GO:0005515
Bma09g00422 1193 Pfam Leucine rich repeat 680 738 IPR001611 GO:0005515
Bma09g00422 1193 CDD STKc_IRAK 886 1155 - -
Bma09g00422 1193 SUPERFAMILY L domain-like 61 365 - -
Bma09g00422 1193 Gene3D - 592 652 - -
Bma09g00422 1193 PANTHER SYSTEMIN RECEPTOR SR160 16 1167 - -
Bma09g00422 1193 Gene3D Transferase(Phosphotransferase) domain 1 956 1157 - -
Bma09g00422 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1002 1014 IPR008271 GO:0004672|GO:0006468
Bma09g00422 1193 SUPERFAMILY L domain-like 644 767 - -
Bma09g00422 1193 SUPERFAMILY Protein kinase-like (PK-like) 861 1152 IPR011009 -
Bma09g00422 1193 Pfam Brassinosteroid receptor island domain 587 651 IPR045381 -
Bma09g00422 1193 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 16 1167 - -
Bma09g00422 1193 ProSitePatterns Protein kinases ATP-binding region signature. 886 909 IPR017441 GO:0005524
Bma09g00422 1193 SUPERFAMILY RNI-like 268 581 - -
Bma09g00422 1193 Pfam Leucine Rich Repeat 444 465 IPR001611 GO:0005515
Bma09g00422 1193 Gene3D Ribonuclease Inhibitor 40 770 IPR032675 -
Bma09g00422 1193 SMART serkin_6 880 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01143 Bma-Chr6:48354489 Bma09g00422 Bma-Chr9:35344749 0 dispersed
Bma09g00422 Bma-Chr9:35344749 Bma15g00826 Bma-Chr15:20290663 0 dispersed
Bma14g00387 Bma-Chr14:4619699 Bma09g00422 Bma-Chr9:35344749 5.05E-06 dispersed
Bma09g00422 Bma-Chr9:35344749 Bma04g01039 Bma-Chr4:18724369 2.09E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66698 PF00069 Pkinase 7.90E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00422 K13415 - csv:101209118 1793.48