Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00431 ATGAACGGTGGGAACAAGCGTAAACGGCCTGCGCCGTCGCCGGCGCAGAAACCTTCGCCGTCTCCACAGGTAGAGCGGCTGGCAACATCGCAAGAGGAAGAGTATTTGGACGAAGACGTCTTCCTCGACGAAACTCTGTTAACCGAGGACGAGCTCATCCTGCGCGACATTGAGGAGCGCCAGGCCCTCGCTTCCTGTCTCTCGAAGTGGACTCGCCCTCCGCTCTCTTCTGCATATGTTTCTCAATCTCAGAGCGTTGTGTTTCAGCAGCTGGAGATCGATTACGTGATTGGAGAGAGTAACCGAGAATTATTGCCTAATTCCGCTGGCCCCGCCGCCATCATCAGAATTTTTGGTGTTACCAGAGAAGGACACAGTGTTTGCTGCAACGTCCATGGATTTGAACCTTACTTTTATATCAGCTGTCCTCCTGGAATGGGTCCTGATGATATCTCCCGGTTCCACCAAGTTCTTGAGGCGAGAATGAGGGAGGTAAATAAAAACAGTAAGGTGCCCAAATATGTTCATCGAATCGAGTTAGTGCAAAAAAGAAGTATCATGTACTATCAGCAACAAACATCTCATCCTTTCCTCAAAATTGTAGTTGCACTACCAACAATGGTCACAAGCTGCCGGGGTATTCTTGACAGAGGCATACAAATTGATGGGCTTGGAATGAAGAGCTTCATGACTTATGAAAGCAATATTCTTTTTGCTCTGCGATTCATGATTGATTGCAACATTGTTGGTGGAAATTGGATTGAAGTACCGGTGGGAAAATATAGGAAAACAGCAAAAATCCTGTCATACTGTCAGTTGGAGTTTGATTGCCTGTATCCAATCCAATTTCTGAAAGTTATATATATCCCCTTAACAGCCCTTGGTAGTTATTCAGAGTTGATCAGCCATGCCCCAGAAGGTGAATTTTCAAAGATGGCTCCCTTCCGGATATTGAGTTTTGATATTGAGTGTGCAGGTCGTAAAGGCCATTTTCCTGAGCCCACCCATGATCCTGTCATACAGGTGGCCAATCTAGTTACTCTCCAAGGGGAGGACCAGCCTTTTATCCGCAATGTCATGACCCTTAACTCTTGCTCTTCTATAGCTGGTGTTGATGTAATGTCATTTGAGACAGAAAGAGAAGTTTTACTTGCCTGGAGGGATTTTATCCGCGAGGTGGACCCTGATGTGGTGATTGGATATAACATCTGCAAATTCGATTTGCCTTATCTCATTGAGAGAGCTGAGAAATTGAGAATCTCTGAATTTCCAATTCTGGGTCGCATCAGAAACAGCAGAGTTCGGGTCAAAGATACAACTTTCTCTTCTAGACAGCTTGGAACTAGGGAAGGTAAAGAAATTACAATAGAAGGGAGAGTTCAATTTGATTTGCTCCAGGTTATGCAACGTGATTACAAACTGAGTTCTTATTCACTGAATTCTGTTTCGTCACATTTTCTTTCTGAACAGAAAGAAGATGTACACCATTCCATTATATCTGATTTACAGAACGGTAATTCTGAAACCAGGAGGCGTTTGGCTGTTTATTGTTTGAAGGACGCTTATCTTCCACAACGGCTGTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTAGAGTCACAGGTGTCCCAATTTCGTTTCTTCTTTCTAGAGGGCAGAGTATTAAGGTATTATCTCAACTTCTTCGGAAGGCAAAACAAAAGAATCTCGTGATTCCAAATGCTAAACAAGCAGGATCTGAGCAAGGAACTTTTGAAGGTGCCACTGTGTTAGAGGCAAGAGCAGGATTTTATGAAAAGCCCATTGCTACATTAGATTTTGCGTCCTTGTATCCCTCCATTATGATGGCATATAATTTATGTTACTGCACCTTGGTAACTCCTGAAGATGTTCGCAAACTAAACCTTCCTCAAGAACTAGTCAATAGAACTCCTTCTGGGGAAACATTTGTACGTTCAAATTTGCAAAAGGAAGCTAAAGACCCTTTTGAGAAGGCGGTATTAGATGGGCGGCAGCTGGCTTTGAAGATAAGTGCAAATTCCGTATATGGATTTACAGGAGCCACAGTTGGCCAGTTACCTTGCTTAGAGATATCTTCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACATACAAAAAAGCTTGTGGAAGATAAATTTACCACACTCGGTGGCTATGAACACAATGCTGAGGTTATATATGGTGATACAGATTCAGTGATGGTGCAGTTTGGCGTGCCCACTGTGGAAGAGGCAATGAACTTGGGAAGGGAAGCGGCTGAATATATCAGTGGCACTTTTATTAAACCCATTAAACTAGAGTTCGAGAAGGTTTATTATCCGTATCTTTTAATTAGCAAAAAGAGATATGCTGGTTTGTTATGGACCAATAGGGAAAAGTTTGACAAAATGGATACAAAAGGCATTGAAACAGTTCGAAGAGACAATTGTCTGTTGGTAAAAAACCTGGTTACCGAGTGCCTGAACAAAATTCTTATTGACAGAGACATTCCTGGTGCAGTACAATACGTCAAGAACATAATTTCTGATCTTCTTATGAACCGCATGGATTTATCACTTCTGGTCATTACCAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTCGAACTTGCTGAGCGCATGCGCAAGTTACACTCGGACACCACACTGTTTTCTCACAAAATACAAAACATAATTATGACAAAAACTCTTCAGCCTTCTATATCTATTTTTAAACTGCCCACAACTTCCCAAACTACAACTGCTTCATATATCAAACCATCCTTTTACCTCTCCTTTTATATGTCAATCCATATCGTTCCTTTTCTTGACCTACATATGCAGCATTATGTTCGAGATGCTGCTACAGCTCCGAATGTTGGGGATCGAGTACCTTATGTGATAATCAAAGGCGCAAAAGGAGCCAAAGCGTACGAGAAGTCAGAAGATCCTATTTTTGTTCTAGAAAATAACATACCAATTGATCCTCAATATTATCTTGAAAATCAAATTAGCAAGCCACTATTACGAATTTTTGAACCCATATTGAAGAATGCCAACAAGGAACTTCTTCATGGAAGTCATACACGATCAATCTTTATCTCGACTCCTTCAAACAGCGGCATAATGAAATTTGCCAAGAAACAACTTACTTGCATTGGCTGCAAAGCTCTACTGAGCAACACGGATAAAACTCTGTGCTCACACTGCAAAGGGAGGGAAGCAGAACTTTACTGCAAAGCTGTGACAAATGTATCAGAGCTTGAGATGCTTTTTGGGAGGTTGTGGACACAGTGCCAAGAATGTCAGGGATCTCTTCACCAAGATGTCCTTTGCACTAGTCGTGATTGTCCAATATTTTATCGTAGAAAGAAAGCACAGAAAGACATGGCTGAAGCCAGGATGCAATTAGATCGCTGGAACTTTTAA 3459 41.98 MNGGNKRKRPAPSPAQKPSPSPQVERLATSQEEEYLDEDVFLDETLLTEDELILRDIEERQALASCLSKWTRPPLSSAYVSQSQSVVFQQLEIDYVIGESNRELLPNSAGPAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEARMREVNKNSKVPKYVHRIELVQKRSIMYYQQQTSHPFLKIVVALPTMVTSCRGILDRGIQIDGLGMKSFMTYESNILFALRFMIDCNIVGGNWIEVPVGKYRKTAKILSYCQLEFDCLYPIQFLKVIYIPLTALGSYSELISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFIRNVMTLNSCSSIAGVDVMSFETEREVLLAWRDFIREVDPDVVIGYNICKFDLPYLIERAEKLRISEFPILGRIRNSRVRVKDTTFSSRQLGTREGKEITIEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPQELVNRTPSGETFVRSNLQKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMNLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLLWTNREKFDKMDTKGIETVRRDNCLLVKNLVTECLNKILIDRDIPGAVQYVKNIISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKLHSDTTLFSHKIQNIIMTKTLQPSISIFKLPTTSQTTTASYIKPSFYLSFYMSIHIVPFLDLHMQHYVRDAATAPNVGDRVPYVIIKGAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQISKPLLRIFEPILKNANKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSNTDKTLCSHCKGREAELYCKAVTNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARMQLDRWNF 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37672864 37694553 - Bma029426.1 Bma09g00431 88477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00431 1152 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 1152 - -
Bma09g00431 1152 ProSitePatterns DNA polymerase family B signature. 738 746 IPR017964 GO:0000166|GO:0003676
Bma09g00431 1152 TIGRFAM pol2: DNA polymerase (pol2) 373 893 - -
Bma09g00431 1152 PRINTS DNA-directed DNA-polymerase family B signature 675 687 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 PRINTS DNA-directed DNA-polymerase family B signature 605 618 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 PRINTS DNA-directed DNA-polymerase family B signature 736 744 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 Pfam DNA polymerase family B 959 1025 IPR006134 GO:0000166|GO:0003677
Bma09g00431 1152 Pfam DNA polymerase family B 546 949 IPR006134 GO:0000166|GO:0003677
Bma09g00431 1152 Gene3D DNA Polymerase, chain B, domain 1 91 267 - -
Bma09g00431 1152 Gene3D - 792 921 IPR042087 -
Bma09g00431 1152 CDD DNA_polB_delta_exo 310 538 - -
Bma09g00431 1152 SUPERFAMILY DNA/RNA polymerases 571 1027 IPR043502 -
Bma09g00431 1152 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 1152 - -
Bma09g00431 1152 SMART polmehr3 313 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 Pfam DNA polymerase family B, exonuclease domain 121 482 IPR006133 -
Bma09g00431 1152 Gene3D - 941 1037 IPR042087 -
Bma09g00431 1152 SUPERFAMILY Ribonuclease H-like 112 552 IPR012337 -
Bma09g00431 1152 Gene3D Palm domain of DNA polymerase 588 791 IPR023211 -
Bma09g00431 1152 Gene3D - 314 532 IPR036397 GO:0003676
Bma09g00431 1152 CDD POLBc_delta 587 1026 - -
Bma09g00431 1152 Pfam C4-type zinc-finger of DNA polymerase delta 1062 1133 IPR025687 -
Bma09g00431 1152 Gene3D Helix hairpin bin 639 691 - -
Bma09g00431 1152 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00431 Bma-Chr9:37672864 Bma13g00638 Bma-Chr13:15300444 3.83E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00431 K02327 - qsu:112011411 1493.02