Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00431 ATGAACGGTGGGAACAAGCGTAAACGGCCTGCGCCGTCGCCGGCGCAGAAACCTTCGCCGTCTCCACAGGTAGAGCGGCTGGCAACATCGCAAGAGGAAGAGTATTTGGACGAAGACGTCTTCCTCGACGAAACTCTGTTAACCGAGGACGAGCTCATCCTGCGCGACATTGAGGAGCGCCAGGCCCTCGCTTCCTGTCTCTCGAAGTGGACTCGCCCTCCGCTCTCTTCTGCATATGTTTCTCAATCTCAGAGCGTTGTGTTTCAGCAGCTGGAGATCGATTACGTGATTGGAGAGAGTAACCGAGAATTATTGCCTAATTCCGCTGGCCCCGCCGCCATCATCAGAATTTTTGGTGTTACCAGAGAAGGACACAGTGTTTGCTGCAACGTCCATGGATTTGAACCTTACTTTTATATCAGCTGTCCTCCTGGAATGGGTCCTGATGATATCTCCCGGTTCCACCAAGTTCTTGAGGCGAGAATGAGGGAGGTAAATAAAAACAGTAAGGTGCCCAAATATGTTCATCGAATCGAGTTAGTGCAAAAAAGAAGTATCATGTACTATCAGCAACAAACATCTCATCCTTTCCTCAAAATTGTAGTTGCACTACCAACAATGGTCACAAGCTGCCGGGGTATTCTTGACAGAGGCATACAAATTGATGGGCTTGGAATGAAGAGCTTCATGACTTATGAAAGCAATATTCTTTTTGCTCTGCGATTCATGATTGATTGCAACATTGTTGGTGGAAATTGGATTGAAGTACCGGTGGGAAAATATAGGAAAACAGCAAAAATCCTGTCATACTGTCAGTTGGAGTTTGATTGCCTGTATCCAATCCAATTTCTGAAAGTTATATATATCCCCTTAACAGCCCTTGGTAGTTATTCAGAGTTGATCAGCCATGCCCCAGAAGGTGAATTTTCAAAGATGGCTCCCTTCCGGATATTGAGTTTTGATATTGAGTGTGCAGGTCGTAAAGGCCATTTTCCTGAGCCCACCCATGATCCTGTCATACAGGTGGCCAATCTAGTTACTCTCCAAGGGGAGGACCAGCCTTTTATCCGCAATGTCATGACCCTTAACTCTTGCTCTTCTATAGCTGGTGTTGATGTAATGTCATTTGAGACAGAAAGAGAAGTTTTACTTGCCTGGAGGGATTTTATCCGCGAGGTGGACCCTGATGTGGTGATTGGATATAACATCTGCAAATTCGATTTGCCTTATCTCATTGAGAGAGCTGAGAAATTGAGAATCTCTGAATTTCCAATTCTGGGTCGCATCAGAAACAGCAGAGTTCGGGTCAAAGATACAACTTTCTCTTCTAGACAGCTTGGAACTAGGGAAGGTAAAGAAATTACAATAGAAGGGAGAGTTCAATTTGATTTGCTCCAGGTTATGCAACGTGATTACAAACTGAGTTCTTATTCACTGAATTCTGTTTCGTCACATTTTCTTTCTGAACAGAAAGAAGATGTACACCATTCCATTATATCTGATTTACAGAACGGTAATTCTGAAACCAGGAGGCGTTTGGCTGTTTATTGTTTGAAGGACGCTTATCTTCCACAACGGCTGTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTAGAGTCACAGGTGTCCCAATTTCGTTTCTTCTTTCTAGAGGGCAGAGTATTAAGGTATTATCTCAACTTCTTCGGAAGGCAAAACAAAAGAATCTCGTGATTCCAAATGCTAAACAAGCAGGATCTGAGCAAGGAACTTTTGAAGGTGCCACTGTGTTAGAGGCAAGAGCAGGATTTTATGAAAAGCCCATTGCTACATTAGATTTTGCGTCCTTGTATCCCTCCATTATGATGGCATATAATTTATGTTACTGCACCTTGGTAACTCCTGAAGATGTTCGCAAACTAAACCTTCCTCAAGAACTAGTCAATAGAACTCCTTCTGGGGAAACATTTGTACGTTCAAATTTGCAAAAGGAAGCTAAAGACCCTTTTGAGAAGGCGGTATTAGATGGGCGGCAGCTGGCTTTGAAGATAAGTGCAAATTCCGTATATGGATTTACAGGAGCCACAGTTGGCCAGTTACCTTGCTTAGAGATATCTTCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACATACAAAAAAGCTTGTGGAAGATAAATTTACCACACTCGGTGGCTATGAACACAATGCTGAGGTTATATATGGTGATACAGATTCAGTGATGGTGCAGTTTGGCGTGCCCACTGTGGAAGAGGCAATGAACTTGGGAAGGGAAGCGGCTGAATATATCAGTGGCACTTTTATTAAACCCATTAAACTAGAGTTCGAGAAGGTTTATTATCCGTATCTTTTAATTAGCAAAAAGAGATATGCTGGTTTGTTATGGACCAATAGGGAAAAGTTTGACAAAATGGATACAAAAGGCATTGAAACAGTTCGAAGAGACAATTGTCTGTTGGTAAAAAACCTGGTTACCGAGTGCCTGAACAAAATTCTTATTGACAGAGACATTCCTGGTGCAGTACAATACGTCAAGAACATAATTTCTGATCTTCTTATGAACCGCATGGATTTATCACTTCTGGTCATTACCAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTCGAACTTGCTGAGCGCATGCGCAAGTTACACTCGGACACCACACTGTTTTCTCACAAAATACAAAACATAATTATGACAAAAACTCTTCAGCCTTCTATATCTATTTTTAAACTGCCCACAACTTCCCAAACTACAACTGCTTCATATATCAAACCATCCTTTTACCTCTCCTTTTATATGTCAATCCATATCGTTCCTTTTCTTGACCTACATATGCAGCATTATGTTCGAGATGCTGCTACAGCTCCGAATGTTGGGGATCGAGTACCTTATGTGATAATCAAAGGCGCAAAAGGAGCCAAAGCGTACGAGAAGTCAGAAGATCCTATTTTTGTTCTAGAAAATAACATACCAATTGATCCTCAATATTATCTTGAAAATCAAATTAGCAAGCCACTATTACGAATTTTTGAACCCATATTGAAGAATGCCAACAAGGAACTTCTTCATGGAAGTCATACACGATCAATCTTTATCTCGACTCCTTCAAACAGCGGCATAATGAAATTTGCCAAGAAACAACTTACTTGCATTGGCTGCAAAGCTCTACTGAGCAACACGGATAAAACTCTGTGCTCACACTGCAAAGGGAGGGAAGCAGAACTTTACTGCAAAGCTGTGACAAATGTATCAGAGCTTGAGATGCTTTTTGGGAGGTTGTGGACACAGTGCCAAGAATGTCAGGGATCTCTTCACCAAGATGTCCTTTGCACTAGTCGTGATTGTCCAATATTTTATCGTAGAAAGAAAGCACAGAAAGACATGGCTGAAGCCAGGATGCAATTAGATCGCTGGAACTTTTAA 3459 41.98 MNGGNKRKRPAPSPAQKPSPSPQVERLATSQEEEYLDEDVFLDETLLTEDELILRDIEERQALASCLSKWTRPPLSSAYVSQSQSVVFQQLEIDYVIGESNRELLPNSAGPAAIIRIFGVTREGHSVCCNVHGFEPYFYISCPPGMGPDDISRFHQVLEARMREVNKNSKVPKYVHRIELVQKRSIMYYQQQTSHPFLKIVVALPTMVTSCRGILDRGIQIDGLGMKSFMTYESNILFALRFMIDCNIVGGNWIEVPVGKYRKTAKILSYCQLEFDCLYPIQFLKVIYIPLTALGSYSELISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFIRNVMTLNSCSSIAGVDVMSFETEREVLLAWRDFIREVDPDVVIGYNICKFDLPYLIERAEKLRISEFPILGRIRNSRVRVKDTTFSSRQLGTREGKEITIEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPQELVNRTPSGETFVRSNLQKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPTVEEAMNLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLLWTNREKFDKMDTKGIETVRRDNCLLVKNLVTECLNKILIDRDIPGAVQYVKNIISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKLHSDTTLFSHKIQNIIMTKTLQPSISIFKLPTTSQTTTASYIKPSFYLSFYMSIHIVPFLDLHMQHYVRDAATAPNVGDRVPYVIIKGAKGAKAYEKSEDPIFVLENNIPIDPQYYLENQISKPLLRIFEPILKNANKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSNTDKTLCSHCKGREAELYCKAVTNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARMQLDRWNF 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37672864 37694553 - Bma029426.1 Bma09g00431 88477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00431 1152 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 84 1152 - -
Bma09g00431 1152 ProSitePatterns DNA polymerase family B signature. 738 746 IPR017964 GO:0000166|GO:0003676
Bma09g00431 1152 TIGRFAM pol2: DNA polymerase (pol2) 373 893 - -
Bma09g00431 1152 PRINTS DNA-directed DNA-polymerase family B signature 675 687 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 PRINTS DNA-directed DNA-polymerase family B signature 605 618 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 PRINTS DNA-directed DNA-polymerase family B signature 736 744 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 Pfam DNA polymerase family B 959 1025 IPR006134 GO:0000166|GO:0003677
Bma09g00431 1152 Pfam DNA polymerase family B 546 949 IPR006134 GO:0000166|GO:0003677
Bma09g00431 1152 Gene3D DNA Polymerase, chain B, domain 1 91 267 - -
Bma09g00431 1152 Gene3D - 792 921 IPR042087 -
Bma09g00431 1152 CDD DNA_polB_delta_exo 310 538 - -
Bma09g00431 1152 SUPERFAMILY DNA/RNA polymerases 571 1027 IPR043502 -
Bma09g00431 1152 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 84 1152 - -
Bma09g00431 1152 SMART polmehr3 313 750 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bma09g00431 1152 Pfam DNA polymerase family B, exonuclease domain 121 482 IPR006133 -
Bma09g00431 1152 Gene3D - 941 1037 IPR042087 -
Bma09g00431 1152 SUPERFAMILY Ribonuclease H-like 112 552 IPR012337 -
Bma09g00431 1152 Gene3D Palm domain of DNA polymerase 588 791 IPR023211 -
Bma09g00431 1152 Gene3D - 314 532 IPR036397 GO:0003676
Bma09g00431 1152 CDD POLBc_delta 587 1026 - -
Bma09g00431 1152 Pfam C4-type zinc-finger of DNA polymerase delta 1062 1133 IPR025687 -
Bma09g00431 1152 Gene3D Helix hairpin bin 639 691 - -
Bma09g00431 1152 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00431 K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7] - qsu:112011411 1493.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00431 Bma-Chr9:37672864 Bma13g00638 Bma-Chr13:15300444 3.83E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1328 . . Bda04g00382 . . . Bma09g00431 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo05g00533 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00768 . 145 883 Core DNA Replication Machinery Family AT4G14700 65.9 6.9e-281 963.4
Bma14g00768 . 80 883 Core DNA Replication Machinery Family AT4G12620 63.2 4.5e-288 987.3
Bma05g00078 . 7 368 Core DNA Replication Machinery Family AT2G37560 64.9 1.4e-134 476.1
Bma05g00061 . 7 360 Core DNA Replication Machinery Family AT2G37560 65.8 1.8e-132 469.2
Bma11g00406 . 7 279 Core DNA Replication Machinery Family AT2G37560 54.3 4.1e-97 351.7
Bma01g00448 . 1 415 Core DNA Replication Machinery Family AT2G01120 61.1 1.2e-138 490.0
Bma01g00093 . 1 319 Core DNA Replication Machinery Family AT1G26840 59.9 1.0e-93 340.1
Bma12g00588 . 1 799 Core DNA Replication Machinery Family AT1G79150 55.6 8.0e-232 800.4
Bma07g01373 . 1 940 Core DNA Replication Machinery Family AT1G44900 76.2 0.0e+00 1368.6
Bma03g00566 BCT 4 728 Core DNA Replication Machinery Family AT2G16440 73.9 5.4e-313 1070.1
Bma01g00291 . 936 1699 Core DNA Replication Machinery Family AT2G07690 74.1 0.0e+00 1086.6
Bma07g00859 . 1 836 Core DNA Replication Machinery Family AT5G44635 70.2 0.0e+00 1139.4
Bma15g00493 CCT 18 722 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1188.7
Bma11g00084 . 40 509 Core DNA Replication Machinery Family AT2G29680 57.2 5.2e-149 524.6
Bma11g00084 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.6 6.1e-136 481.1
Bma12g00066 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.1 8.2e-255 876.3
Bma09g00801 . 3 596 Core DNA Replication Machinery Family AT3G25100 76.8 7.7e-253 869.8
Bma15g00665 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.6 2.2e-252 868.2
Bma04g01647 . 22 728 Core DNA Replication Machinery Family AT3G09660 60.8 6.2e-250 860.5
Bma10g01097 CCT 1 610 Core DNA Replication Machinery Family AT2G14050 76.2 1.2e-270 929.1
Bma03g01547 . 1 246 Core DNA Replication Machinery Family AT2G14050 74.9 3.2e-95 346.3
Bma03g01549 . 9 260 Core DNA Replication Machinery Family AT2G14050 56.9 7.4e-76 282.0
Bma05g00365 . 6 353 Core DNA Replication Machinery Family AT2G20980 54.6 5.2e-104 374.8
Bma15g00229 . 1 228 Core DNA Replication Machinery Family AT1G77320 71.9 2.9e-95 347.1
Bma13g00787 . 1 191 Core DNA Replication Machinery Family AT1G80190 69.1 7.5e-75 276.9
Bma14g00519 . 2 192 Core DNA Replication Machinery Family AT1G80190 69.1 1.7e-74 275.8
Bma14g00698 . 2 192 Core DNA Replication Machinery Family AT1G80190 68.0 1.1e-73 273.1
Bma08g00026 . 1 191 Core DNA Replication Machinery Family AT1G80190 67.5 3.1e-73 271.6
Bma05g00599 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma07g00894 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 4.3e-59 224.2
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT1G19080 65.9 6.2e-68 253.8
Bma08g01083 . 1 182 Core DNA Replication Machinery Family AT3G55490 65.9 6.2e-68 253.8
Bma02g00932 . 15 163 Core DNA Replication Machinery Family AT5G49010 64.0 1.5e-48 189.5
Bma15g00244 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.1 2.4e-217 751.9
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma05g00872 . 1 453 Core DNA Replication Machinery Family AT5G41880 65.3 7.8e-181 630.2
Bma09g00431 . 27 1152 Core DNA Replication Machinery Family AT5G63960 74.7 0.0e+00 1696.8
Bma10g00174 . 4 437 Core DNA Replication Machinery Family AT2G42120 76.0 1.4e-198 689.1
Bma05g01138 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 7.1e-188 653.7
Bma11g00219 . 2 1474 Core DNA Replication Machinery Family AT1G08260 76.5 0.0e+00 2272.7
Bma11g00219 . 23 1474 Core DNA Replication Machinery Family AT2G27120 74.1 0.0e+00 2150.6
Bma12g01277 . 7 486 Core DNA Replication Machinery Family AT5G22110 70.3 1.6e-195 679.1
Bma03g00647 . 22 198 Core DNA Replication Machinery Family AT5G22110 56.8 1.2e-54 211.1
Bma07g00220 . 7 911 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-287 986.1
Bma05g00808 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 4.6e-170 594.0
Bma01g02668 BCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.4e-177 619.0
Bma01g01795 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 2.4e-177 618.2
Bma04g00016 BCT 1 336 Core DNA Replication Machinery Family AT1G21690 81.3 1.5e-152 535.8
Bma02g00213 BCT 1 339 Core DNA Replication Machinery Family AT1G77470 71.4 6.2e-144 507.3
Bma01g00807 BCT 1 283 Core DNA Replication Machinery Family AT1G77470 57.4 1.3e-93 340.1
Bma06g00893 . 1 450 Core DNA Replication Machinery Family AT2G06510 77.2 3.3e-214 741.5
Bma12g00253 . 2 454 Core DNA Replication Machinery Family AT2G06510 65.5 1.9e-185 646.0
Bma12g00964 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 66.9 2.1e-242 835.1
Bma08g00242 CCT 1 591 Core DNA Replication Machinery Family AT5G08020 62.5 1.0e-220 763.1
Bma12g00253 . 1 558 Core DNA Replication Machinery Family AT5G45400 62.8 2.4e-207 719.2
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT5G45400 63.0 6.8e-170 594.7
Bma12g00964 CCT 1 624 Core DNA Replication Machinery Family AT5G61000 64.8 6.2e-237 817.0
Bma08g00242 CCT 1 585 Core DNA Replication Machinery Family AT5G61000 61.7 9.4e-217 750.0
Bma12g00253 . 2 579 Core DNA Replication Machinery Family AT4G19130 60.7 7.9e-205 710.7
Bma06g00893 . 3 453 Core DNA Replication Machinery Family AT4G19130 60.3 2.3e-164 576.2
Bma01g00646 . 1 361 Core DNA Replication Machinery Family AT5G26680 83.9 7.4e-178 620.2
Bma02g01168 . 1 1131 Core DNA Replication Machinery Family AT1G08840 50.7 1.5e-288 989.2
Bma08g00918 . 1 295 Core DNA Replication Machinery Family AT2G25100 68.2 1.6e-115 412.5
Bma08g00503 . 1 239 Core DNA Replication Machinery Family AT2G25100 72.4 1.0e-98 356.7
Bma07g00168 . 46 802 Core DNA Replication Machinery Family AT1G08130 67.6 1.4e-286 982.2
Bma07g00168 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.0e-231 797.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00431 Bma_Chr09 FPKM 33.758865 42.876705 20.806345 20.464691 74.860245 76.355492 80.630356 41.949238 43.218922 43.071213