Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00432 ATGACTAAATGTCAGCGGCGACTCTATGAAGCTTTTTTGCAGAGTGAATTGGTACTTTCAGCTTTTGATGGATCACCATTGGTTGCACTTACGATTCTCAGAAAGATTTGTGACCATCCATTCCTCTTGACTAAACGAGCTGCTGAAGATGTACTGGAAGGGATGGATTTAATACTGGATCCTGGAGATGCTGGTGTAGTGGAAAAATTAGCAAAGTACGTAGCAGATGTTGCTGACATGGATGATTATGCAGAGAAGCATGACAATGTCTCATGCAAAATATCTTTCATATTGTCTTTATTGGAAAACTTGATTCCAGAGGGACATCATGTTCTTATTTTCTCCCAAACTCGCAAGATGCTTGATCTTATTGAGGATTTACTATCAATATATGGTTACAAGTTTTTACGCATAGATGGCACCACAAAAGCGAGTGATAGATTGAGAATCGTAAATGAATTCCAAGAAGGTAATGTTGCTCCTATTTTTCTTTTGACATCTCAAGTTGGCGGTTTGGGTCTAACACTTACTCGAGCTGATCGTGTAATTGTGGTTGATCCTGCTTGGAATCCAAGTACGGATAACCAAAGTGTTGATCGTGCATACCGTATTGGACAAAAGAAAGATGTCATTGTATATAGATTAATGACATGTGGGACTGTTGAAGAAAAGATATACAGAAAACAGATTTATAAAGGGGGATTGTTTAAAACTGCAACTGAGCATAAAGAACAAATCCGATACTTCAGCCAACGGGATCTTAGGGAGCTTTTCAGTCTCCCAAAAGAGGGATTTGATATTTCTGTGACCCAGCAGCAACTACATGAGGAGCATGATAACATGCATACAATGGATGAGTTTTTGAAATCCCATATAGAGTTTTTAAAAACTCTGGCAATAGCAGGAGTTAGTCACCACAATTTACTATTCTCCAAGACGGCACCTGTGAAAGAAGATGACCACTGGATTAGGGCTAAGAATGCTTTCAAACCAAAGGATGTAAACTCAAACAACAAAACAATTAGCAGGCTGTCGCAAATTTTTGCAAATAAGCAGAGGGGAACAGCTCCACTCAGAGCGCCGTTTAGGAAAATAGCTCCGTCTCCATTCAGAACGCCATTCAAATCGCAGCTCCGTCGCTGGCCCACACTCCGTCCAGCCGTAGTCGCCATTATTCAAATGGCTCTGAAACCATGA 1197 40.52 MTKCQRRLYEAFLQSELVLSAFDGSPLVALTILRKICDHPFLLTKRAAEDVLEGMDLILDPGDAGVVEKLAKYVADVADMDDYAEKHDNVSCKISFILSLLENLIPEGHHVLIFSQTRKMLDLIEDLLSIYGYKFLRIDGTTKASDRLRIVNEFQEGNVAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQIYKGGLFKTATEHKEQIRYFSQRDLRELFSLPKEGFDISVTQQQLHEEHDNMHTMDEFLKSHIEFLKTLAIAGVSHHNLLFSKTAPVKEDDHWIRAKNAFKPKDVNSNNKTISRLSQIFANKQRGTAPLRAPFRKIAPSPFRTPFKSQLRRWPTLRPAVVAIIQMALKP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37847548 37864130 + Bma029429.1 Bma09g00432 88478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00432 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 286 IPR027417 -
Bma09g00432 398 PANTHER SNF2/RAD54 FAMILY MEMBER 1 323 - -
Bma09g00432 398 CDD SF2_C_SNF 85 216 - -
Bma09g00432 398 Pfam Helicase conserved C-terminal domain 93 205 IPR001650 -
Bma09g00432 398 Gene3D - 1 293 IPR027417 -
Bma09g00432 398 PANTHER OS04G0692700 PROTEIN 1 323 - -
Bma09g00432 398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 96 255 IPR001650 -
Bma09g00432 398 SMART helicmild6 122 205 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00432 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - tcc:18611874 542.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00432 Bma-Chr9:37847548 Bma13g00729 Bma-Chr13:21489168 2.46E-56 dispersed
Bma09g00432 Bma-Chr9:37847548 Bma09g00440 Bma-Chr9:38289177 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00432 Bma_Chr09 FPKM 3.29111 3.763572 8.588134 7.87171 4.083785 3.89617 4.80487 22.660883 20.924137 25.464497