Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00435 ATGGCTGCAACTGCGACATTGACGATTCATCTCTCTCGCCTTTCCCGCCATTTCTCTTTCCTTCGTCCCTGTCGTCGTTCATTTCTTCCGCCCAGGCCTTTCAGTGACTGTTTTTTTCGACGCGAACGTTGGCGGAGCTACAGCGTCTTCTCATGCCCTAAGATTTTATCCAGGCCATGTTCTGTCTCTGCCTCTGTGATTTCTCGAGATTGTATGAATCATGCTGGTGTGGATGATGAAATATACGATGTGATAGTTGTTGGAGGAGGACATGCAGGGTGTGAAGCTGCGCTTGCATCTGCTCGTTTAGGGGCAAAAACTCTTCTTCTCACTCTTAATATTGACAGAATTGCTTGGCAGCCTTGTAATCCAGCGGTTGGTGGACCAGCAAAATCTCAGCTAGTTCATGAAGTGGATGCCCTTGGTGGTGAAATTGGGAAGATTGCTGATAGGTGCTATTTACAAAAGCGTGTTCTGAACATATCAAGAGGTCCTGCTGTTCGAGCACTGCGGGCACAAACTGATAAAAGAGAATATGCCATGCAAATGAAAAATATAGTGGAAAGCACTCCCAACCTTTCTATCCGAGAAGCAATGGTTACAGATATCCTAATGGGCAAGAATGATAACGTGGAAGGAGTTTGTACATTCTTTGGCATGAAATTTTATGCTCCATCTGTTATTCTCACAACGGGAACCTTTATGAGTGGTAAAATTTGGATTGGTAGAACCTCTATGCCTGCAGGAAGAGCTGGTGAATCAGCTTCACATGGACTCACTGAAAAATTACAGGGTCTTGGATTTGAAACTGATCGGTTAAAGACAGGAACCCCAGCACGCGTAGACAGCCGGACTGTGGATTTTTCTGGACTAGAACCTCAACATGGTGATGAAGAGGTCAGTTGGTTTAGTTTTGACCCTGATTTCCATGTTGAGAGGGAGCAAATGTGTTGCTTTCTGACACGCACAACGAAGAGCACTCACCAACTTATTAAAGAAAACTTGCATGAAACTCCCACTTATGGAGGCTGGGTTGAAGCAAAGGGGCCGAGATATTGTCCTTCCATAGAAGATAAGATTGTGAGATTTCAAGATAAAGAGTCCCATCAAATATTTCTTGAACCAGAGGGCAGAAGTGTTCCTGAACTCTATGTACAGGGTTTTTCAACTGGATTACCTGAAAGATTACAGTTGCCACTTTTGAGAACTTTACCTGGACTTGAAAAATGTTCTATGCTGAGACCTGCTTATGCTGTAGAGTATGATTTCTTGCCTGCTCATCAGTGTAGCAGGTCTCTAATGACAAAGAAGATCAGTGGTCTTTTCTTCTCTGGTCAAATAAATGGGACCACAGGCTATGAAGAAGCAGCAGCACAGGGTATAATTTCTGGAATCAACGCGGCAAGGCATTCAGATGGCAAGTCCCTGATTGTTCTTGAGAGGGAAAGTAGTTATATAGGAACATTAATTGATGACCTGGTGACGAAGGACCTCCGAGAGCCTTACCGTATGTTGACAAGCCGCTCTGAACACCGACTACTTCTTCGATCCGATAATGCTGATAGCCGACTTACACCTTTGGGCCGTGAAATTGGTTTAATAGACGACAGACGCTGGAAGCTCTACCAAGAGAAGCAAGCTCGAATTTTGGAAGAAAAAAAAAGGCTAAAAGCCGTGCGAATTTCTGGAGGAGATTTGGCTGCTGATATTACCCATCTATCAGGTCAGACAGTAAAGGACTCTTCAACACTTGAGAGCCTTCTTAAGAAACCACATATAGAATATAAAGTACTGGATAAGCACGGTTTTGGCAATAGGCTCTTGTCTAGAGCAGAGAAAGATTGTGTGGAAATCGACATCAAGTACGAGGGATTCATATTGCGCCAGCAAAGCCAACTGCAACAGATGATCCATCAGCAACACAAACCATTACCAGAGGACTTGGATTATCATGCGATGACAACATTGTCTCTTGAATCACGGGAGAAGCTTTCCAAGGTGAGGCCACAAACTATAGGTCAAGCAAGCAGAGTAGGTGGGGTGAACCCTGCTGACATAACTGCTCTCCTTATTATTCTAGAGGCCAATAGAAGGAAAGCTCAGGAAGCAAAGAGGCATGGTTCCATCAAAACAGATTCAGATCAATTTCAAGACCCTTTGACTAACACCATAAGTTGTTAA 2181 43.97 MAATATLTIHLSRLSRHFSFLRPCRRSFLPPRPFSDCFFRRERWRSYSVFSCPKILSRPCSVSASVISRDCMNHAGVDDEIYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKIADRCYLQKRVLNISRGPAVRALRAQTDKREYAMQMKNIVESTPNLSIREAMVTDILMGKNDNVEGVCTFFGMKFYAPSVILTTGTFMSGKIWIGRTSMPAGRAGESASHGLTEKLQGLGFETDRLKTGTPARVDSRTVDFSGLEPQHGDEEVSWFSFDPDFHVEREQMCCFLTRTTKSTHQLIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQIFLEPEGRSVPELYVQGFSTGLPERLQLPLLRTLPGLEKCSMLRPAYAVEYDFLPAHQCSRSLMTKKISGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARILEEKKRLKAVRISGGDLAADITHLSGQTVKDSSTLESLLKKPHIEYKVLDKHGFGNRLLSRAEKDCVEIDIKYEGFILRQQSQLQQMIHQQHKPLPEDLDYHAMTTLSLESREKLSKVRPQTIGQASRVGGVNPADITALLIILEANRRKAQEAKRHGSIKTDSDQFQDPLTNTISC 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38081447 38089657 + Bma029437.1 Bma09g00435 88481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00435 726 ProSitePatterns Glucose inhibited division protein A family signature 1. 349 363 IPR020595 -
Bma09g00435 726 TIGRFAM gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 82 695 IPR004416 GO:0002098
Bma09g00435 726 Gene3D - 535 624 - -
Bma09g00435 726 MobiDBLite consensus disorder prediction 703 726 - -
Bma09g00435 726 Pfam Glucose inhibited division protein A 83 474 IPR040131 -
Bma09g00435 726 PANTHER PROTEIN MTO1 HOMOLOG, MITOCHONDRIAL 75 700 IPR004416 GO:0002098
Bma09g00435 726 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 75 700 IPR002218 GO:0008033|GO:0050660
Bma09g00435 726 Gene3D - 76 302 IPR036188 -
Bma09g00435 726 Gene3D - 390 534 IPR036188 -
Bma09g00435 726 PRINTS Pyridine nucleotide disulphide reductase class-I signature 83 105 - -
Bma09g00435 726 PRINTS Pyridine nucleotide disulphide reductase class-I signature 227 236 - -
Bma09g00435 726 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 478 690 IPR026904 -
Bma09g00435 726 SMART GIDA_assoc_3_2 620 691 - -
Bma09g00435 726 SUPERFAMILY FAD/NAD(P)-binding domain 82 336 IPR036188 -
Bma09g00435 726 Gene3D - 644 694 IPR044920 -
Bma09g00435 726 Hamap tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 80 698 IPR004416 GO:0002098
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00435 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - qsu:112008561 1194.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00435 Bma_Chr09 FPKM 138.559692 144.909546 54.25626 58.061077 51.623379 54.460777 57.600849 28.205412 25.328112 22.981731