Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00485 ATGGAGACAAGGCCCTCTTTTTTCATTCAAAGAAATGGTGCAGAGCAAATTAATTGCAGTGGGCAATCTGTTATTTTTCCTTCCTTAATATCAGTTCAAGAGACATATCCCAAGTTTCCTAACTCTCAACATGTTCCGATGGAAAGAGAACTTGTTACAAAGCTGCTCAACCATGGCTGTCTTTTACCCTCAGACAGTGGGATAATTGATCACATGTTTTCACCATCCGTGGGATTTACAATGGACGGTCATGTTGTGTCACCTCAGGGAGAACATTCCAAAGTCTCTCCTTCTGCTTCACGGATATCGACAAATGGAGTACTACCACATTCTCATCTTGGAACACTTCCATCTACAGCATCAGGTCATCATGGCAAAGAAAACAACGTGGCCTGGTGTCCAGATGCATTTTCAAGTTTTCTAGATCTTCCTGTAAATACCCCTGTTATAGGAGATGTTCAGGTAGAGAGCAGCAAGGGTGTGGATTTGATGCAATCCGAGGAATTTAGCAAAGAAAGTGTGTGGCAAGACTGGGCGGATCAGCTAATAACTGATGATTCTATGACTTCTGACTGGAATGAGATCTTAGCTAATACTGACATTGCAGAGTTGGAACCAAAGATGGCATACCAGGTTTCTAAACCATCACCAAATTTCCAAGATTGCTCACGAGTTCTTTCTTCTTCAGGAGAAAGACAGATTGTTTTCCCTCCCAATTCCTTGGCAAATAGTGTCTCGACCAAGTCACGTATGCGTTGGACACAAGAACTTCACGAGGCATTTGTGGACGCTGTGAACCAACTTGGTGGTGGTGAAAGAGCGACTCCAAAGGGTGTTTTGAAGCTCATGAAAGTTGGAGGTCTGACAATTTATCATGTGAAAAGCCATTTACAGAAATATAGAACAGCTAGGTACAGACCTGATTCCTCTGAAGGATGCTCTGACAGAAAATTGACCACCCTTGACGAAATGTCTTCGCTCGACTTGAAAACGAGTATGAATATCACTGAAGCTCTGCGTCTACAAATGGAAGTTCAGAAGAGGCTTCACGAACAGCTTGAGATCCAAAGACATTTACAGCTGAGAATTGAAGAACAAGGAAGGTGTCTCCAAATGATGTTTGAGAAGTCTGGTCTTGACGCGCTCAAGCCACCGTCATTGTCAGACGATCCGGCAAACTGTAAAATAGCAGCTTCCAAAACCAATATTGAGGTGGAGGGTAATCAATCAAATTGTCAAACGACAAAGCGTCCGAGGACGGAGTCAAGCTCCCAAGACGACCTACAGTCTTCTTAA 1296 43.29 METRPSFFIQRNGAEQINCSGQSVIFPSLISVQETYPKFPNSQHVPMERELVTKLLNHGCLLPSDSGIIDHMFSPSVGFTMDGHVVSPQGEHSKVSPSASRISTNGVLPHSHLGTLPSTASGHHGKENNVAWCPDAFSSFLDLPVNTPVIGDVQVESSKGVDLMQSEEFSKESVWQDWADQLITDDSMTSDWNEILANTDIAELEPKMAYQVSKPSPNFQDCSRVLSSSGERQIVFPPNSLANSVSTKSRMRWTQELHEAFVDAVNQLGGGERATPKGVLKLMKVGGLTIYHVKSHLQKYRTARYRPDSSEGCSDRKLTTLDEMSSLDLKTSMNITEALRLQMEVQKRLHEQLEIQRHLQLRIEEQGRCLQMMFEKSGLDALKPPSLSDDPANCKIAASKTNIEVEGNQSNCQTTKRPRTESSSQDDLQSS 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40226115 40229097 - Bma029523.1 Bma09g00485 88531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00485 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 30 413 IPR044848 GO:0003700
Bma09g00485 431 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Bma09g00485 431 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 248 302 IPR006447 GO:0003677
Bma09g00485 431 Pfam MYB-CC type transfactor, LHEQLE motif 333 376 IPR025756 -
Bma09g00485 431 MobiDBLite consensus disorder prediction 399 431 - -
Bma09g00485 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 305 IPR017930 -
Bma09g00485 431 MobiDBLite consensus disorder prediction 402 431 - -
Bma09g00485 431 Coils Coil 336 356 - -
Bma09g00485 431 Gene3D - 247 306 - -
Bma09g00485 431 Pfam Myb-like DNA-binding domain 250 301 IPR001005 -
Bma09g00485 431 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 30 413 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma09g00485 Bma15g00732 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01422 Bma-Chr4:49129282 Bma09g00485 Bma-Chr9:40226115 8.58E-48 dispersed
Bma09g00485 Bma-Chr9:40226115 Bma13g00423 Bma-Chr13:7767665 1.54E-80 dispersed
Bma10g00259 Bma-Chr10:2391234 Bma09g00485 Bma-Chr9:40226115 4.40E-29 dispersed
Bma04g01503 Bma-Chr4:51061360 Bma09g00485 Bma-Chr9:40226115 1.73E-43 transposed
Bma15g00732 Bma-Chr15:13582960 Bma09g00485 Bma-Chr9:40226115 6.43E-143 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57849 PF00249 Myb_DNA-binding 4.80E-08 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00485 - - hbr:110657601 426.402