Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma09g00584 | ATGGACGAGGACTTCGACATTCCGGCAGCTGATGAGATGAACGAGGACTTGGATTTTGCGGACGATAGTCCTAGTCTTAAGGTCGGGGAAGAGAAAGAGATCGGAAAGCTTGGGTTGAAGAAGAAGCTACTCAAGGAAGGTGAAGACTGGGATACTCCTGATGTTGGCGATGAGGTTGAAGTTCATTATACTGGGACCTTGCTCGATGGGACTAAGTTCGACTCGAGTCGCGATAGAGATTCAACCTTCAAATTCACTCTTGGGCAGGGTCAAGTCATCAAAGGATGGGACCTGGGAATCAAAACGATGAAGAAAAAAGAAAATGCTCTTTTTACGATCCCACCTGATCTTGCTTATGGATCATCCGGATCCCCTCCAACTATTCCTCCAAATGCCACTCTTCAATTTGATGTTGAATTGCTGTCCTGGACTAGTGTAAAGGACATATGCAAGGATGGTGGAATTTTTAAGAAAATCCTCGTCAAAGGCGAGAAATGGGAGAATCCCAAAGACCCTGATGAAGTACTGGTCAAGTTTGAAGCTCAGCTGGAGGATGGAACTGTCGTTGCCAAGTCTGATGGAGTAGAGTTTGCTGTCCGAGAGGGATATTTTTGCCCTGCTTTATCAAAGGCTGTTAAGACCATGAAGAAGGGGGAGAAGGTACTACTGACTGTGAAACCACAATATGGGTTTGGGGATGATGGTAAGCCAGCCTCTGGTAGTGATGGTGCTGTACCACCAAATGCAACTCTTCAGATCACTCTAGAGTTGGTATCATGGAAAACCGTCTCTGAAGTTACTGATGACAAAAAGGTTCTTAAGAAAATACTTAAAGAAGGAGAAGGGTATGAGCGTCCCAATGATGGCTCTGTCGTGAAAATAAAGGTGATTGGGAAACTTTATGATGGCTCAATATTTTTGAAGAAGGGACATGGGGATGGGGAGGAACCCTTTGAGTTTAAAACTGATGATGAACAAGTAATTGATGGACTTGATAGAGCTGTGATGACAATGAAAAAGGGTGAGGTAGCATTACTGACTATTGCTCCGGAGTATGCATATGGTCCATCCGAGTCACGACAGGAGTTAGCTATTGTTCCTCCCAACTCGACTGTGTCCTTTGAAGTCGAACTTGTCTCTTTTGTCAAGGAGAAGGAATCGTGGGACATGAATACGCAGGAGAAGATTGAAGCTGCTGGTAAGAAGAAGGAAGAAGGGAATGTTTTGTTTAAAGCTGGTAAATATGCTAAAGCTGCCAAGAGATACGAGACAGCTGTAAAGTATATTGAGTATGATACTTCTTTCAGCGAGGAGGAAAAAAAGCAGGCCAAAGCACTGAAAGTTGCTTGCAATCTGAACAGTGCTGCCTGCAAGTTAAAGCTGAAATCGTACAAGGAGGCAGAGAAGCTATGCACTAAGGTCTTAGAAGCTGAAAGTGGAAATGTGAAGGCTCTCTACAGAAGGGCACAGGCATATATTCAAATGGCAGACTTGGACTTGGCAGAGATTGACATTAAAAAGGCCTTGGAGATTGACCCCGACAATCGGGAGGTCAAAGTGGAGTACAAAATTTTGAAGGATAAGATGAAAGAATTCAACAAAAAGGAAGCTAAATTCTATGGAAACATGTTTGCAAAGATGAACAAGTTTGATGGACTTGACTCAAAAGTAAGTCTCCTACTTCATTGGTGA | 1692 | 43.44 | MDEDFDIPAADEMNEDLDFADDSPSLKVGEEKEIGKLGLKKKLLKEGEDWDTPDVGDEVEVHYTGTLLDGTKFDSSRDRDSTFKFTLGQGQVIKGWDLGIKTMKKKENALFTIPPDLAYGSSGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVKGEKWENPKDPDEVLVKFEAQLEDGTVVAKSDGVEFAVREGYFCPALSKAVKTMKKGEKVLLTVKPQYGFGDDGKPASGSDGAVPPNATLQITLELVSWKTVSEVTDDKKVLKKILKEGEGYERPNDGSVVKIKVIGKLYDGSIFLKKGHGDGEEPFEFKTDDEQVIDGLDRAVMTMKKGEVALLTIAPEYAYGPSESRQELAIVPPNSTVSFEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYAKAAKRYETAVKYIEYDTSFSEEEKKQAKALKVACNLNSAACKLKLKSYKEAEKLCTKVLEAESGNVKALYRRAQAYIQMADLDLAEIDIKKALEIDPDNREVKVEYKILKDKMKEFNKKEAKFYGNMFAKMNKFDGLDSKVSLLLHW | 563 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 42927416 | 42930801 | + | Bma029647.1 | Bma09g00584 | 88630 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma09g00584 | 563 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755 | |
| Bma09g00584 | 563 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 382 | 551 | - | - | |
| Bma09g00584 | 563 | Gene3D | - | 262 | 384 | IPR046357 | GO:0003755 | |
| Bma09g00584 | 563 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755 | |
| Bma09g00584 | 563 | SUPERFAMILY | FKBP-like | 38 | 157 | - | - | |
| Bma09g00584 | 563 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755 | |
| Bma09g00584 | 563 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 167 | 258 | IPR001179 | GO:0003755 | |
| Bma09g00584 | 563 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 53 | 141 | IPR001179 | GO:0003755 | |
| Bma09g00584 | 563 | Gene3D | - | 32 | 146 | IPR046357 | GO:0003755 | |
| Bma09g00584 | 563 | SUPERFAMILY | FKBP-like | 265 | 399 | - | - | |
| Bma09g00584 | 563 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Bma09g00584 | 563 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515 | |
| Bma09g00584 | 563 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515 | |
| Bma09g00584 | 563 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515 | |
| Bma09g00584 | 563 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Bma09g00584 | 563 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 270 | 381 | - | - | |
| Bma09g00584 | 563 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 382 | 551 | - | - | |
| Bma09g00584 | 563 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 270 | 381 | - | - | |
| Bma09g00584 | 563 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 268 | - | - | |
| Bma09g00584 | 563 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515 | |
| Bma09g00584 | 563 | SUPERFAMILY | TPR-like | 387 | 548 | IPR011990 | GO:0005515 | |
| Bma09g00584 | 563 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR001440 | GO:0005515 | |
| Bma09g00584 | 563 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755 | |
| Bma09g00584 | 563 | Gene3D | Tetratricopeptide repeat domain | 385 | 542 | IPR011990 | GO:0005515 | |
| Bma09g00584 | 563 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 268 | - | - | |
| Bma09g00584 | 563 | Gene3D | - | 147 | 261 | IPR046357 | GO:0003755 | |
| Bma09g00584 | 563 | SUPERFAMILY | FKBP-like | 148 | 263 | - | - | |
| Bma09g00584 | 563 | Coils | Coil | 515 | 535 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma08g01112 | Bma-Chr8:50079267 | Bma09g00584 | Bma-Chr9:42927416 | 4.22E-09 | dispersed | |
| Bma09g00584 | Bma-Chr9:42927416 | Bma15g00650 | Bma-Chr15:9407932 | 0 | dispersed | |
| Bma11g00259 | Bma-Chr11:2277399 | Bma09g00584 | Bma-Chr9:42927416 | 6.38E-08 | dispersed | |
| Bma12g00591 | Bma-Chr12:26059747 | Bma09g00584 | Bma-Chr9:42927416 | 7.71E-08 | dispersed | |
| Bma09g00583 | Bma-Chr9:42923024 | Bma09g00584 | Bma-Chr9:42927416 | 1.78E-06 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma09g00584 | K09571 | - | rcu:8272763 | 911.753 |