Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00586 ATGGAAAATGAACTTTTCTTCAATGCCAGACACCCGCCGCCGTCTCCGACGGCGTTTGAATCAACTGCTGCGATGTCTGTTTGGCAACAACTAGCTCCGGCGCCGAACTGCTCGACGGAGAAATCCACTGGCTACTTTCTCAACCCGAGTACACACAACGATTCAGCTCTCTGTTCCGTCGTCCCTTCGCCGGAGGTATCGAATTCCAATGTCTCCGGCGAAGGGCTTAGGATTAGGGAACTGATAGGGATGCTCGGAAAAAATCCGAATTATTGCACTCCTTTGAGCTCACATCCGAAGCTTAATTCTTCATTAATGGTGGCAAATTCTAATGTAGCGGAATTGTCAGGCGATCCTGGATTTGCAGAGAGGGCTAGGTTTTCTTGCTTTGGAAGTAAGAGTTTTAATGGTCGAACCGGTCAGTTTCCTTCTCACAGATCTACACCATTAATGGCGGACGGAAAGCTTTCTCGAGTTTCAAGCAGTCCATCTCTCAAAGCATTTGGATCGACTCACCCAATGGATTCCACATTCTCAGAACAAATCTCAAACGACTTAAATTGCAGAAAAAGAAAGGCAAATGCAAAAGGAAAACTGAAAGAACTCGTTAAGGCGAATGAAGTTGACGAGCATTTAAATGGAAAACGGTGCAAAGTGAACGAAAAGAACAGTTATGGAAATGGCGGCGACAGGACAGAGGAAGAAGGCGGACGTGGAAAAAGCTCTGCAAATGAAGAGAAGACAAACAAGACGAAGAGCAACCCTAAACCTCCAGAGCCTTACAAAGATTACATTCATGTCCGAGCAAGAAGGGGCCAAGCCACTGATAGCCATAGCCTTGCAGAAAGAGTTAGGAGAGAGAAGATAAGTGAAAGAATGAAGCTTCTTCAAGATCTCGTTCCAGGCTGCAACAGAGTCACCGGAAAAGCACTAATGCTCGACGAAATAATAAACTATGTTCAGTCATTGCAACGTCAAGTAGAGTTCCTTTCCATGAAGTTGGCTTCTGTCAACACCCGGTTGGAATCCACCGTGGATTCTCCGAGCTCCAAAGAAGCCTTTCAATCAAGCAATTCTCTATCAAATCCAGTGTTTCCAAATGATTCTTCACCATCTACAATCTATGAACACCATAATCTTGGCCAACAATTAAGTTTGATAAATGGAATTGACCAACAGTTTCAAGCGTTTGAAGAAGACAGCCTGCAATCCATTGTTCAAATGGGAATTGGCCAATCTCAAAACAGAGAGATAGTATTTCAGTGTCCATTTGCAGTTTCCGGCATGGAAATCGAGCTCTGA 1302 44.55 MENELFFNARHPPPSPTAFESTAAMSVWQQLAPAPNCSTEKSTGYFLNPSTHNDSALCSVVPSPEVSNSNVSGEGLRIRELIGMLGKNPNYCTPLSSHPKLNSSLMVANSNVAELSGDPGFAERARFSCFGSKSFNGRTGQFPSHRSTPLMADGKLSRVSSSPSLKAFGSTHPMDSTFSEQISNDLNCRKRKANAKGKLKELVKANEVDEHLNGKRCKVNEKNSYGNGGDRTEEEGGRGKSSANEEKTNKTKSNPKPPEPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNRVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLESTVDSPSSKEAFQSSNSLSNPVFPNDSSPSTIYEHHNLGQQLSLINGIDQQFQAFEEDSLQSIVQMGIGQSQNREIVFQCPFAVSGMEIEL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 42986767 42988971 - Bma029650.1 Bma09g00586 88632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00586 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 323 IPR011598 GO:0046983
Bma09g00586 433 SMART finulus 279 329 IPR011598 GO:0046983
Bma09g00586 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 271 340 IPR036638 GO:0046983
Bma09g00586 433 Gene3D - 270 347 IPR036638 GO:0046983
Bma09g00586 433 MobiDBLite consensus disorder prediction 155 176 - -
Bma09g00586 433 CDD bHLH_AtBPE_like 263 347 - -
Bma09g00586 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 181 384 IPR024097 GO:0006355
Bma09g00586 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 26 87 IPR024097 GO:0006355
Bma09g00586 433 MobiDBLite consensus disorder prediction 345 372 - -
Bma09g00586 433 PANTHER BHLH TRANSCRIPTION FACTOR 26 87 - -
Bma09g00586 433 PANTHER BHLH TRANSCRIPTION FACTOR 181 384 - -
Bma09g00586 433 MobiDBLite consensus disorder prediction 227 262 - -
Bma09g00586 433 MobiDBLite consensus disorder prediction 218 262 - -
Bma09g00586 433 Pfam Helix-loop-helix DNA-binding domain 277 324 IPR011598 GO:0046983
Bma09g00586 433 Coils Coil 320 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01401 Bma-Chr6:50785189 Bma09g00586 Bma-Chr9:42986767 4.67E-78 dispersed
Bma09g00586 Bma-Chr9:42986767 Bma12g00509 Bma-Chr12:16505688 1.62E-48 dispersed
Bma03g01225 Bma-Chr3:19434382 Bma09g00586 Bma-Chr9:42986767 6.87E-42 transposed
Bma15g00648 Bma-Chr15:9352134 Bma09g00586 Bma-Chr9:42986767 4.33E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57854 PF00010 HLH 5.70E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00586 - - zju:107426586 388.267