Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00589 ATGGAAACAACCTCTATAAGATGTCTTCTCAACAGTATTTCTCGATTCATTCATCTGGTTTCTTCTCGGACAATAAAGTTCATATCTATCCAGGAAGATTACAAAGATATGGTTGGTGTGTTAAAGCTATTGAAACCCGTACTTGATGATGTCGTTGATTATAAAATTATTTCAGATGATTTACTTTACAAAGAGTGTGAAGTATTGGATGTTGTGGTTAATGAGGCCCGAGAGTTTATGGAAAACTGGGGACCAAAGACGAGCAAAATTTGCAGTGTTTTGCAGAGTGATTCATTGTTGATGAAAATTCGAAATTTGTCGCTAGAAATTTGTCAGATACTCTGTAAATTGTTACAATCATCTCCATCTAGTTCAAGTTTAACAGCTGTTGAGCGATGCCTGCAAAGCCTTAAATTTTTCTCTAAGCAAGAAAGAGCATCTGAGTATATAAGAGAGGCTCTAAGAAGACAAAGAGATGATAATGGCCAAAGCACTGGACATCTCGAAAAAATCATTGAACTTCTGTGTTTGAAATCGAGTCAGGAACTTTTGAAGGAGAGTATTGCTGTGGAAAAAGAGAGGATGAATGCCAAAGTTAATGAAGCAAAGGGAGAAACAAGTCAAATGGACCAAATTGTGGCTTTTATTGGCAGCATACGCAATTGGATGGCTAGAACTGATCAGTATCAGGGGATTATTCAAGTTCCAATTCCTCCATATTTTCGATGTTCTTTATCGTCGGAGTTGATGTTGGATCCTGTGATTGTGGCATCAGGTCAAACATATGATAGATATTCCATTCAAAAGTGGCTTGACAATGGACTAACCATATGCCCAAAAACTCATATGGTACTCTCTCATACCAACCTCACTCCTAATTATACTGTCAAGGCCATGATAGCAAATTGGTGCGAGGAAAATAATATAAATTTGCGTAACTTGGAGCGGAATTTCGCTTCTATCTCATCACCACCTATCGTTGTATCACAGCGAGATTCGATCCAGATTGATAGTCATTTTTCTTTGACCAATAGTAATTTCACTGCACAATCGTCAATCGAAGTTGGAAATATCAATGAGAAGCAAACTGTAGGCATCTCCTCTCAATTGTGTGGAGAAAATTCCAAAGATGCCGTAGAGAAGAGCGACCACTCGTCACATGGGCAGTCATATGCGCATAGTGGGAGTGGATCGGCTTCTAGTGCCATTTCGAGCATTGACTATGTTTCTTCTGCTCTGAATGAGGTATTGAGGATATCTAATTCGGAGGATTATGTGAGCGAGCTATCTGGGGAAATCAAATCTGAGAATCCTACTGCTTATTCTCAACAGGAGTCAGGAATCTCTCGGCAGTTAGTTGGAGAAAACTTGCAGGGCCGAAAAAAGGAAGTGGACATGGCAGAGAATGGAAAGGATAACTATAAGAGAGGCAGTTCCCTTCCAAATTCAACTGTGGCCCGTGATGAGTTGACGACAACTTCCCATGTCAATGACTTGATTGTCGACCTCAAGAGCCAAAGGAAAGAAGTGCAAACTAATGCTGCCGAAGAATTACGGCTTCTAGCAAAGCACAATAAGGAAAATCGCGTGATTATAGGAAAATGTGGAGCTATTGTGCCTTTACTTTCACTTTTATATTCAAAAGTGAAGTTAACACAGGAGCATGCTGTGACTGCTCTGTTAAATCTTTCCATTGATTTAAATAATAAGGCAATGATAGCTGATTCAGAAGCTATAGAACCACTTATTCATGTTCTGAAGACGGGAAATGACGTGGCCAAAGAGAATTCGGCAGCAGCTCTATTCAGCCTCTCCGTATTAGAAGAATACAAGGTGAAAATTGGTCGTTCTGATGCGGTTAGAGCTTTGGTGGATCTTCTGGGTTCGGGAAGTCTCAGAGGAAAGAAGGATGCTACAACTGCTCTTTTTAATTTGTCTATTTTTCATGAAAATAAGGCTCGAATTGTTCAAGCCGGAGCGATAAGGTACCTTGTTGAGTTTTTAGACCCGTCAACTGGGATGGTCGACAAGGCTGCTGCTCTGTTAGCTAATTTGTCAACCATTTCAGAAGGGGGTTTGGCAATTGCGCGAGAAGGGGGTATTCCATTATTAGTTGAACTTGTTGACACTGGATCCCTTAGCGGCAAGGAAAATGCTGCCTCCATACTTTTACAGCTGTGCCTTCATAGTTCAAAGTTTTGTACTTTGATTCTCCAAGAAGGTGCAGTTCCACCCCTCGTTGCCTTATCACAGTCCGGGACTCCTCGTTCGAAAGAAAAGGCACAACAGCTTCTCAGCCACTTTCGGAATCAGCGGGAAGGAGGATCTGGGAAAGGAAAATCGTGA 2346 41.01 METTSIRCLLNSISRFIHLVSSRTIKFISIQEDYKDMVGVLKLLKPVLDDVVDYKIISDDLLYKECEVLDVVVNEAREFMENWGPKTSKICSVLQSDSLLMKIRNLSLEICQILCKLLQSSPSSSSLTAVERCLQSLKFFSKQERASEYIREALRRQRDDNGQSTGHLEKIIELLCLKSSQELLKESIAVEKERMNAKVNEAKGETSQMDQIVAFIGSIRNWMARTDQYQGIIQVPIPPYFRCSLSSELMLDPVIVASGQTYDRYSIQKWLDNGLTICPKTHMVLSHTNLTPNYTVKAMIANWCEENNINLRNLERNFASISSPPIVVSQRDSIQIDSHFSLTNSNFTAQSSIEVGNINEKQTVGISSQLCGENSKDAVEKSDHSSHGQSYAHSGSGSASSAISSIDYVSSALNEVLRISNSEDYVSELSGEIKSENPTAYSQQESGISRQLVGENLQGRKKEVDMAENGKDNYKRGSSLPNSTVARDELTTTSHVNDLIVDLKSQRKEVQTNAAEELRLLAKHNKENRVIIGKCGAIVPLLSLLYSKVKLTQEHAVTALLNLSIDLNNKAMIADSEAIEPLIHVLKTGNDVAKENSAAALFSLSVLEEYKVKIGRSDAVRALVDLLGSGSLRGKKDATTALFNLSIFHENKARIVQAGAIRYLVEFLDPSTGMVDKAAALLANLSTISEGGLAIAREGGIPLLVELVDTGSLSGKENAASILLQLCLHSSKFCTLILQEGAVPPLVALSQSGTPRSKEKAQQLLSHFRNQREGGSGKGKS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43052668 43055602 - Bma029654.1 Bma09g00589 88635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00589 781 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Bma09g00589 781 CDD RING-Ubox_PUB 241 282 IPR045210 -
Bma09g00589 781 SUPERFAMILY ARM repeat 489 768 IPR016024 -
Bma09g00589 781 MobiDBLite consensus disorder prediction 751 781 - -
Bma09g00589 781 PANTHER U BOX DOMAIN-CONTAINING 7 776 - -
Bma09g00589 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 618 660 IPR000225 GO:0005515
Bma09g00589 781 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 7 776 - -
Bma09g00589 781 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Bma09g00589 781 Pfam U-box domain 237 308 IPR003613 GO:0004842|GO:0016567
Bma09g00589 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 317 IPR013083 -
Bma09g00589 781 MobiDBLite consensus disorder prediction 375 400 - -
Bma09g00589 781 SUPERFAMILY RING/U-box 230 311 - -
Bma09g00589 781 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 659 700 IPR000225 GO:0005515
Bma09g00589 781 SMART arm_5 688 728 IPR000225 GO:0005515
Bma09g00589 781 SMART arm_5 648 687 IPR000225 GO:0005515
Bma09g00589 781 SMART arm_5 607 647 IPR000225 GO:0005515
Bma09g00589 781 SMART arm_5 566 606 IPR000225 GO:0005515
Bma09g00589 781 SMART arm_5 525 565 IPR000225 GO:0005515
Bma09g00589 781 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Bma09g00589 781 Pfam Armadillo/beta-catenin-like repeat 610 646 IPR000225 GO:0005515
Bma09g00589 781 Coils Coil 185 205 - -
Bma09g00589 781 Coils Coil 507 527 - -
Bma09g00589 781 Gene3D - 478 774 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00003 Bma-Chr9:236508 Bma09g00589 Bma-Chr9:43052668 0 dispersed
Bma09g00589 Bma-Chr9:43052668 Bma14g01592 Bma-Chr14:32906392 4.84E-20 dispersed
Bma09g00589 Bma-Chr9:43052668 Bma11g00033 Bma-Chr11:532492 2.60E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00589 - - pvy:116109506 914.835