Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00604 ATGACTGGTTCTGGTTCTCCCTGCGGAGCCTGCAAGTTCTTAAGACGAAAATGTGTCCGAGGCTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGAGCTTCTCACTTTGCAGCCATTCACAAGGTTTTCGGAGCTAGCAATGTTTCCAAGCTTCTTGCCCATCTTCCTGTTTCTGATCGCTGCGAAGCTGCCGTTACCATCTCCTACGAAGCTCAAGCTCGCCTGCAAGACCCTATTTATGGCTGCGTTTCTCATATTTTCTCTCTTCAACAGCAGGTCGTCAATTTGCAGGCGCAACTAGCTTCTTTGAAAGAACATGCTGCTCAGAGCGTATTCAACAGTTCTGCTGCTGAAAACCCTAGTCAAATATTTATCGGGAAATTTCCTTCTCCCCCGCAGGATCTTTCAAATTGGGTGAAGTTGGAAAACTCAACTGAAATGTCACAATTGCATCAAAATTTCTGCCCTGGCAGCTCTCCTATGCCTTTCTATAATGAGAAGACTGTCATGGATTCTTACCCTTTGGAGAATTTAGTCGTTCCAGAAAAGAATCCCAGCTTCGGTGAGACCTCTAATTCAATATCTTCTTATGAAATGCAAACAAGCAATAGGCAGGAATGGAGTTTCGGAGATGCAGACGAGCTTCAGTTCACGGCTTTCGGCTACTTCCACCATTGA 681 45.08 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQLASLKEHAAQSVFNSSAAENPSQIFIGKFPSPPQDLSNWVKLENSTEMSQLHQNFCPGSSPMPFYNEKTVMDSYPLENLVVPEKNPSFGETSNSISSYEMQTSNRQEWSFGDADELQFTAFGYFHH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43218142 43218906 + Bma029668.1 Bma09g00604 88650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00604 226 Coils Coil 87 107 - -
Bma09g00604 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 225 - -
Bma09g00604 226 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Bma09g00604 226 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 225 - -
Bma09g00604 226 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g01128 Bma-Chr5:50271815 Bma09g00604 Bma-Chr9:43218142 4.00E-55 dispersed
Bma09g00604 Bma-Chr9:43218142 Bma10g00422 Bma-Chr10:4424258 5.77E-50 dispersed
Bma09g00604 Bma-Chr9:43218142 Bma13g00845 Bma-Chr13:36303614 1.86E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57858 PF03195 LOB 3.60E-36 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00604 K13945 - vvi:100266975 296.204