Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00608 ATGGAAGAGGTTGAGGAGGCTAACAAAGCAGCTGTTGAAAGCTGCCATAGATTATTAAGTCTATTTACTCAACCCCAAGATGAAGTACGGTACAGAAGTTTGATGGTGGAAACTGGGGAAACTATTTCTAAGTTTAAGAAAGTTGCATCTATTCTGAACATTGGTTTGGGCCATGCAAGAGCCAGAAAACTCAAGAAAATCCATACTCCTTTTCCTCAGACCATCTTTTTAGACAACCCTTATTCCAGATTAGACCATCAAAACAAAACCCTCCAGCTTGATTCTGTGTGCCTCGGAACCCCATCGTTGGAGTTGAGCTCAAATGGGAAAACTCCTCTTCAACTTTCTCAGCAAACACCCCCTTCCCACTATCACTTCCTTCATCAACAGAGGTTGTTTCTACAGCAGCATCAGATGAGTAATCAACAGGCAGAAATGATGTTTCGTAGGAGTAACAGTGCCTTAAACTTGAATTTTGATGGGTCTACTTGCACACCGACGATGTCATCGACGAGGTCCTTCATTTCTTCGCTGAGTGTTGATGGAAGTGTGGCCAATTTAGAAGGAAATGCCTTCCATTTGACTGGGGCTACTCGTTCTTTGGACCAGACATCACAGCATAAGAGGAAGTGCTCTGCAAGGGGAGATGATGGGGGTGTTAAATGCGGAAGTAGTGGTAGATGCCACTGCTCCAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAAGTACCCGCCATTAGCAACAAGCTTGCTGATATTCCTCCTGATGATTATTCATGGAGAAAATACGGCCAGAAGCCCATTAAGGGTTCTCCTCACCCAAGGGGGTATTATAAGTGTAGCAGCATGAGAGGTTGCCCGGCAAGGAAGCACGTGGAAAGATGCTTAGAAGACCCGTCGATGCTCATAGTTACCTATGAAGGAGAGCATAACCACGCTAAGGTACCTTCTCAATCTGCAAATACTTGA 972 44.34 MEEVEEANKAAVESCHRLLSLFTQPQDEVRYRSLMVETGETISKFKKVASILNIGLGHARARKLKKIHTPFPQTIFLDNPYSRLDHQNKTLQLDSVCLGTPSLELSSNGKTPLQLSQQTPPSHYHFLHQQRLFLQQHQMSNQQAEMMFRRSNSALNLNFDGSTCTPTMSSTRSFISSLSVDGSVANLEGNAFHLTGATRSLDQTSQHKRKCSARGDDGGVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHAKVPSQSANT 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43273074 43274702 - Bma029672.1 Bma09g00608 88654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00608 323 ProSiteProfiles WRKY domain profile. 250 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma09g00608 323 MobiDBLite consensus disorder prediction 203 224 - -
Bma09g00608 323 Pfam Plant zinc cluster domain 208 253 IPR018872 -
Bma09g00608 323 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma09g00608 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 95 IPR044810 GO:0003700
Bma09g00608 323 Pfam WRKY DNA -binding domain 257 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma09g00608 323 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 105 323 - -
Bma09g00608 323 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 105 323 IPR044810 GO:0003700
Bma09g00608 323 Gene3D WRKY domain 239 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma09g00608 323 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 95 - -
Bma09g00608 323 SUPERFAMILY WRKY DNA-binding domain 253 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00258 Bma-Chr9:13682400 Bma09g00608 Bma-Chr9:43273074 8.56E-60 dispersed
Bma09g00608 Bma-Chr9:43273074 Bma15g00464 Bma-Chr15:5094922 1.32E-48 dispersed
Bma15g00687 Bma-Chr15:11485384 Bma09g00608 Bma-Chr9:43273074 3.85E-33 dispersed
Bma09g00608 Bma-Chr9:43273074 Bma01g02264 Bma-Chr1:79806697 1.56E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57859 PF03106 WRKY 1.90E-26 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00608 - - pop:7476889 499.975