Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma09g00608 | ATGGAAGAGGTTGAGGAGGCTAACAAAGCAGCTGTTGAAAGCTGCCATAGATTATTAAGTCTATTTACTCAACCCCAAGATGAAGTACGGTACAGAAGTTTGATGGTGGAAACTGGGGAAACTATTTCTAAGTTTAAGAAAGTTGCATCTATTCTGAACATTGGTTTGGGCCATGCAAGAGCCAGAAAACTCAAGAAAATCCATACTCCTTTTCCTCAGACCATCTTTTTAGACAACCCTTATTCCAGATTAGACCATCAAAACAAAACCCTCCAGCTTGATTCTGTGTGCCTCGGAACCCCATCGTTGGAGTTGAGCTCAAATGGGAAAACTCCTCTTCAACTTTCTCAGCAAACACCCCCTTCCCACTATCACTTCCTTCATCAACAGAGGTTGTTTCTACAGCAGCATCAGATGAGTAATCAACAGGCAGAAATGATGTTTCGTAGGAGTAACAGTGCCTTAAACTTGAATTTTGATGGGTCTACTTGCACACCGACGATGTCATCGACGAGGTCCTTCATTTCTTCGCTGAGTGTTGATGGAAGTGTGGCCAATTTAGAAGGAAATGCCTTCCATTTGACTGGGGCTACTCGTTCTTTGGACCAGACATCACAGCATAAGAGGAAGTGCTCTGCAAGGGGAGATGATGGGGGTGTTAAATGCGGAAGTAGTGGTAGATGCCACTGCTCCAAGAAGAGGAAACATAGGGTGAAAAGATCAATTAAAGTACCCGCCATTAGCAACAAGCTTGCTGATATTCCTCCTGATGATTATTCATGGAGAAAATACGGCCAGAAGCCCATTAAGGGTTCTCCTCACCCAAGGGGGTATTATAAGTGTAGCAGCATGAGAGGTTGCCCGGCAAGGAAGCACGTGGAAAGATGCTTAGAAGACCCGTCGATGCTCATAGTTACCTATGAAGGAGAGCATAACCACGCTAAGGTACCTTCTCAATCTGCAAATACTTGA | 972 | 44.34 | MEEVEEANKAAVESCHRLLSLFTQPQDEVRYRSLMVETGETISKFKKVASILNIGLGHARARKLKKIHTPFPQTIFLDNPYSRLDHQNKTLQLDSVCLGTPSLELSSNGKTPLQLSQQTPPSHYHFLHQQRLFLQQHQMSNQQAEMMFRRSNSALNLNFDGSTCTPTMSSTRSFISSLSVDGSVANLEGNAFHLTGATRSLDQTSQHKRKCSARGDDGGVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIVTYEGEHNHAKVPSQSANT | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 43273074 | 43274702 | - | Bma029672.1 | Bma09g00608 | 88654 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma09g00608 | 323 | ProSiteProfiles | WRKY domain profile. | 250 | 313 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma09g00608 | 323 | MobiDBLite | consensus disorder prediction | 203 | 224 | - | - | |
Bma09g00608 | 323 | Pfam | Plant zinc cluster domain | 208 | 253 | IPR018872 | - | |
Bma09g00608 | 323 | SMART | WRKY_cls | 255 | 315 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma09g00608 | 323 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 2 | 95 | IPR044810 | GO:0003700 | |
Bma09g00608 | 323 | Pfam | WRKY DNA -binding domain | 257 | 313 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Bma09g00608 | 323 | PANTHER | WRKY DNA-BINDING PROTEIN 21-RELATED | 105 | 323 | - | - | |
Bma09g00608 | 323 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 105 | 323 | IPR044810 | GO:0003700 | |
Bma09g00608 | 323 | Gene3D | WRKY domain | 239 | 317 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Bma09g00608 | 323 | PANTHER | WRKY DNA-BINDING PROTEIN 21-RELATED | 2 | 95 | - | - | |
Bma09g00608 | 323 | SUPERFAMILY | WRKY DNA-binding domain | 253 | 314 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma09g00258 | Bma-Chr9:13682400 | Bma09g00608 | Bma-Chr9:43273074 | 8.56E-60 | dispersed | |
Bma09g00608 | Bma-Chr9:43273074 | Bma15g00464 | Bma-Chr15:5094922 | 1.32E-48 | dispersed | |
Bma15g00687 | Bma-Chr15:11485384 | Bma09g00608 | Bma-Chr9:43273074 | 3.85E-33 | dispersed | |
Bma09g00608 | Bma-Chr9:43273074 | Bma01g02264 | Bma-Chr1:79806697 | 1.56E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57859 | PF03106 | WRKY | 1.90E-26 | CL0274 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma09g00608 | - | - | pop:7476889 | 499.975 |