Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00617 ATGGAGAATAATCCGTATGAGGCCGCGACCGACGATTTCCTAGAGCAAATTCTTGGTGTTCCTGCTTTCGCGCCGAATGAATCAGGCCTGGCAGGACATGATGGTGGATTGTCAGGAGCTGTGGCTCGCGGTTCGATGATGCTGCAGCTCAGCTCCGGGGACGGTTCTTACCACTCGGCCTGCGTTGGTGGGGGAAGCGATGGGGGCGCAGGGTTTCGTGGCCCTGGTTTTCCCTTGGGGTTGAGCTTGGAGCAAGGAAAGTGTGGGTATCTGAAGCCTGAGGAGGCATCCGGTAGCGGCCCGTGGTTCCGCGGCGAGGTCGTCGATGGCAGAGCTTCATCGATAACAACTGTTTTCCAAGGCCTACAAATTACCACCAATGTTAAAGGAGCGCCACATCCTCCAGCAATGCGGCCAAGAGTTCGAGCTAGACGAGGACAAGCTACAGATCCCCATAGTATTGCTGAGAGGTTACGCAGGGAAAGAATTGCAGAGAGAGTCAGGGCATTGCAGGAACTGGTTCCTAGTTTAAACAAGACAGATAAAGCTGCTATGCTTGATGAAATAGTAGATTATGTGAAGTTCCTGCGACTCCAAGTGAAGGTTTTAAGCATAAGTAGACTGGGAGGTGCTGGGGCCGTAGAACCTCTTATAACAGACATTTCATTATTATCACTTAAGGAAAATGGAAGTGGAGATGGAAGAAACCGACCCGCCTGGGAGAAGTGGTCAGATGATTGCACAGAAAGACAAGTTGCTAAGTTAATGGAAGAAAATGTTGGTGCTGCTATGCAATTTCTTCAATCCAAGGCCATTTGTCTCATGCCTATCTCTTTAGCCTGCGCAATCGACCACACCAAGCCAGCTGACTCCGGCAGTGTGGTCGAGCCGGAGTCAAACCCACCATACTCGGCCTTATAG 921 51.03 MENNPYEAATDDFLEQILGVPAFAPNESGLAGHDGGLSGAVARGSMMLQLSSGDGSYHSACVGGGSDGGAGFRGPGFPLGLSLEQGKCGYLKPEEASGSGPWFRGEVVDGRASSITTVFQGLQITTNVKGAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERVRALQELVPSLNKTDKAAMLDEIVDYVKFLRLQVKVLSISRLGGAGAVEPLITDISLLSLKENGSGDGRNRPAWEKWSDDCTERQVAKLMEENVGAAMQFLQSKAICLMPISLACAIDHTKPADSGSVVEPESNPPYSAL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 43393282 43396745 - Bma029683.1 Bma09g00617 88663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00617 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 292 - -
Bma09g00617 306 MobiDBLite consensus disorder prediction 129 151 - -
Bma09g00617 306 MobiDBLite consensus disorder prediction 287 306 - -
Bma09g00617 306 Gene3D - 142 203 IPR036638 GO:0046983
Bma09g00617 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Bma09g00617 306 Pfam Helix-loop-helix DNA-binding domain 152 196 IPR011598 GO:0046983
Bma09g00617 306 PANTHER TRANSCRIPTION FACTOR UNE12 ISOFORM X1 7 292 - -
Bma09g00617 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 205 IPR036638 GO:0046983
Bma09g00617 306 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00324 Bma-Chr1:2675360 Bma09g00617 Bma-Chr9:43393282 4.37E-57 dispersed
Bma09g00346 Bma-Chr9:30183026 Bma09g00617 Bma-Chr9:43393282 0 dispersed
Bma09g00617 Bma-Chr9:43393282 Bma15g00611 Bma-Chr15:7800367 1.66E-163 dispersed
Bma13g00994 Bma-Chr13:42094371 Bma09g00617 Bma-Chr9:43393282 6.09E-12 dispersed
Bma13g01005 Bma-Chr13:42313730 Bma09g00617 Bma-Chr9:43393282 6.94E-12 dispersed
Bma09g00617 Bma-Chr9:43393282 Bma14g01254 Bma-Chr14:20440056 6.91E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57861 PF00010 HLH 1.90E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00617 - - tcc:18613240 399.438