Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma09g00661 ATGGAGCCAATGGATATAGTGGGAAAGTCGAAAGAGGACGCTTCGCTTCCAAAAGCAACTATGACGAAAATCATCAAGGAGATGTTGCCGCCGGATGTACGAGTCGCAAGAGATGCTCAAGATCTTTTAATCGAGTGTTGTGTAGAGTTTATAAATCTAGTATCATCGGAGTCTAATGAAGTATGTAACAGGGAAGATAAAAGAACGATTGCGCCTGAACATGTACTCAAGGCATTAGAGATACTTGGTTTTGGCCAGTACATCGAAGAAGTCTATTCCGCATATGAACAGCACAAGCTCGAGACCATGCAAGACTCCTTGAAGGGTGGAAAGTGGAGCAATGGAGCTGAGATGACGGAGGAGGAGGCCCTGCTGGAGCAGCAGAGAATGTTTGCCGAGGCTCGAGCAAGAATGAACGGCGGGGCCACAACTCCAAAGCAAGCAGAGGGTGATCAAAGTTTAGAGAGC 468 47.01 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALEILGFGQYIEEVYSAYEQHKLETMQDSLKGGKWSNGAEMTEEEALLEQQRMFAEARARMNGGATTPKQAEGDQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 44215882 44218252 - Bma031523 Bma09g00661 88707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma09g00661 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Bma09g00661 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 - -
Bma09g00661 156 MobiDBLite consensus disorder prediction 135 156 - -
Bma09g00661 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Bma09g00661 156 Gene3D Histone, subunit A 4 144 IPR009072 GO:0046982
Bma09g00661 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma09g00661 K21751 DR1, NC2-beta; down-regulator of transcription 1 - jre:109017784 288.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00879 Bma-Chr3:8582910 Bma09g00661 Bma-Chr9:44215882 4.41E-103 dispersed
Bma09g00661 Bma-Chr9:44215882 Bma14g00951 Bma-Chr14:10825725 1.31E-17 dispersed
Bma09g00661 Bma-Chr9:44215882 Bma08g00961 Bma-Chr8:48622251 4.04E-17 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00661 . 1 145 CCAAT-DR1 Transcription Factor Family AT5G08190 84.8 9.6e-65 243.0
Bma03g00879 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G08190 82.6 9.0e-63 236.5
Bma09g00661 . 1 145 CCAAT-DR1 Transcription Factor Family AT5G23090 85.5 2.7e-67 251.5
Bma03g00879 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 85.2 1.7e-66 248.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57866 PF00808 CBFD_NFYB_HMF 3.90E-22 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma09g00661 Bma_Chr09 FPKM 0.0 1.043217 0.994375 1.49958 0.0 1.22964 2.051308 0.225633 0.657788 0.84883